Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05042 ATGGAGCGACCCGGGAGCTTCAGCGACAGTCATCATATTATAGAAATAGCTGGGAGTGTCGAGGCTTCTACATCTTCCTCATCTCGTGATAGAAATTTTAATGGTGTAGACGAGTCACATCGTGAAGAAAGAATTAGTGGTGCGCGGTTGGCTGTTGGCCAGCCTTCAGTTTCCACCTCGGGCATATCAAATAGTAGGAGTTCTTCGTTAGTAAGAAGGGGGGACGCTCGTCGGAGTAGGAGTCCTGTGCATTCTGGGTTATGGATATCTATTGAACTAGTTCTGTTAGTAAGCCAGATTGTTGCGTCTATTGTTGTTTTGTCGTTGTCAAGGAATGAGCATCCAAGGACCCCGTTGTTTCAATGGATAGTGGGCTATGCTTCTGGATGTGTTGCTACACTCCCTCTTCTTTATTGGCGGTATTATAATCATAATCATATGCGAGAACAAGAATCAGCTCAGACACGTCAAACGTCTCCTCGGGTTAGTGATCCTTCTGGGACATTTCTTTCGATTGCCAGAAATAATGGAGGGGATGATGGTCAGGCAGCTGCTGCATCTGCTAGAAGCAATCAAACTTCACTATTGATGAATAGAAGAATGAAGATACTTGTGGAATACTTCAAAATATCCTTAGATTGCTTTTTTGCTGTGTGGTTTGTTGTTGGAAACGTATGGATCTTTGGAGGACGATCTTCTGTTGATGAAGCTCCTAATTTGTATAGGTTATGTATAGTGTTTCTTGCATTTAGCTGTATCGGTTATGCTATGCCTTTCATTCTCTGTTCAACCATCTGCTGCTGTCTCCCATGTATAATTTCCATCCTTGGTGTTAGAGAGGATCTGTCACAAAACAGAGGAGCAACTTCTGAATCCATTAATGCACTGCCAGTTTACAAGTTCAAGATGAAGAAAAATAAAAGAAGCAGTGAAAACAACTCTGGTAATGTAGAAGGTGGAATTGTGGCAGCAGGAACTGCAAAAGAGCGTGTGATCTCTGGTGAAGATGCGGTTTGTTGCATCTGCCTCGCAAAGTATGAAAATAACGACGAGCTTAGAGAACTGCCTTGTTCTCATCTTTTCCACAAAGACTGTGTTGATAAGTGGTTGAAGATAAATGCATTGTGCCCTCTTTGCAAGAGTGAGGTTGGTGAAGACCCAACAGGATTAGGGTCTGGAGAAGATGCCACCCAAACAACATGA 1203 0.4298 MERPGSFSDSHHIIEIAGSVEASTSSSSRDRNFNGVDESHREERISGARLAVGQPSVSTSGISNSRSSSLVRRGDARRSRSPVHSGLWISIELVLLVSQIVASIVVLSLSRNEHPRTPLFQWIVGYASGCVATLPLLYWRYYNHNHMREQESAQTRQTSPRVSDPSGTFLSIARNNGGDDGQAAAASARSNQTSLLMNRRMKILVEYFKISLDCFFAVWFVVGNVWIFGGRSSVDEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDLSQNRGATSESINALPVYKFKMKKNKRSSENNSGNVEGGIVAAGTAKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGEDPTGLGSGEDATQTT 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05042 400 MobiDBLite consensus disorder prediction 52 70 - -
Vivi4g05042 400 MobiDBLite consensus disorder prediction 18 77 - -
Vivi4g05042 400 MobiDBLite consensus disorder prediction 33 47 - -
Vivi4g05042 400 FunFam E3 ubiquitin-protein ligase 322 388 - -
Vivi4g05042 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 387 IPR013083 -
Vivi4g05042 400 Pfam Ring finger domain 339 380 IPR001841 -
Vivi4g05042 400 SUPERFAMILY RING/U-box 329 386 - -
Vivi4g05042 400 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 383 - -
Vivi4g05042 400 ProSiteProfiles Zinc finger RING-type profile. 339 380 IPR001841 -
Vivi4g05042 400 SMART ring_2 339 379 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05042 Vivi-Chr4 181184953 181190725 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05042 12 385 C3H Transcription Factor Family AT1G80400 53.421 4.81e-141 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05042 - - ccaj:109788834 624.78