Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05036 ATGAGTCCTTCAAAGAAAGAAGAAGAAAGAGTTGAAAGAATAATTAGAGGTCTCTTAAAACTTCCTGAAAATAGAAGATGCATCAATTGCAATGCCTTGGGACCACAATATGCATGTACAACATTCTCAACATTTGTATGCACAAATTGCAGTGGACTACATCGAGAGTTCACGCATCGAGTAAAATCGGTATCGATGGCAAAATTCACTCCCGATGAAGTCACTGCTCTTCAAGCCGGTGGCAATGAGAGAGCGAAGCAGATTTATTTCAAAGGATGGGATCCTATGCGACATTCGTATCCCGATTCCAATAATATGCACAGACTTCGAGATTTTATCAAGCATGTCTATGTGGACCGAAAATATACCGGTGAAATAAGTCAAGAAACTCTTCCCAGGATTAAAATGAATGACAAGGAGGAGTCCTATGTGAGTAAGAAAAATAGTTCGTTTCGTTTAGAGTTGGTAAGTCCTAGGTCAAGTCCCGGAGCAAGAAACAGTCCAAGTGAAAGAAACGAGGGCGCGAATTTAAGATATGTATACGATGAAAGCAGAAGTCCTAAATACGTACGAAAGTATTCAAGATATGGAGGATTAAGCAAAAGTCCTATGAAATTTGAGGTAGTTGATGATAGGTTTCGGGACGAAGATTATAGAACCCACAGGCAATCAAATCTAGAATCAAAGATAGGACAACTTTCATTTGATGGTCGTAAGAATGTGGACAGATCCCAAGCACCAGTACCAAGATCTTCGGGTGAAATCACAACGAAGAATGATTCATCTTTACAAGCAACAACTTCTGGCGGAGAAGGTTCTATTGAGAAAAAACCGTCGGAGCAAATAAGTAATAAACCAAGAAGCTTCAATGATTTGAGTATGAAGTCTCTAGCTTCTGAAACTGCTATTGTCGCTGTACAAGAAACACCGAGTATGACACAGTCTCAAGCTTCTGAAACTGCTATTGTCGCTGTACAAGAAACACCGAGTATGACCCAGGAAAGTGAAAGTAATTGGGCCTCATTCGAAACATCTACTGAGGAAAATGTTCCTAAAACTCCAAACACAAACACCGTTACATCTCGCACAACAGAACCAACACCTAAAGCGGAACCAACACCTAAAGCAAACACTTCAAGTCCTTTAGACCTTTTACTTTTCGAATTATCAGGTCCTTTTGTTGCAACCACTAGTGACAATGTTCCAACAACTTCGACAGTAGAAAACGCCTCTACATTGGATTTTCCATCTACTTCAACATGTTCTGAGATGGCACAACCTTGTAACGAAGCTCCTCCACCGCAACCCGAGCTAGATGAAACAGAAAACCCCGTTGAAGTTTCACATGGAGATAAACCACAGATAGAAGATCCCATTGAAGTTTCACATGCACATGAACCCCCAAGCATGCATGATTATCCTTCTGTTTCTGTTGGTTGGAGTTCAGCAACACAACCTATAAAATCGCCAAACAGTGTAGTTTCAAATAACGAGCCATCATTTTCTCCTAATACGCATGATTCATCACGCGCATTTGATGAACTATCTTCTCGTACCACCTCAAATCCTACTCAAAACACCAATCCTGATGTCCCCTCCCAGTCCGGTATAGTAAAAACCAAGTCTAGTGGAAGAATGGAACTTCCAGAGGACCTTTTTACAGCAAGCTTTTTATCTGGTCCCGCACCACAAGCAGGTTGGAAGAATGTTCAACATCATGTCATGGGATATGGAAATAATATGCAGTATCATCCTAATGCAGTGCCTCCCTCAGGACTTCCCGTTGCACCAAAATACATGAACCCTTTTGAAGCAACCGAAGGGAGAAGTAAACTGCAAGGATCATCGTCTGCTACTCAAGCATCAATGCATGGTGTGCTACCAGATGTATCACATAGAACAGGACTAATGCATGCTACAAGTCTCGGTTCTTTAGACACAATGATGCCTTATTCTGCAAGTTATGCATCACCGGTTACCGGTGTGTGCTTTGATCAAGTTAACAATGAAGAGCAACTTATTAGATCACAAGGATTCGATACCTTCAATGGCGGCATAACTCGTTATGCATCTCTAGATAGCATTCAACAATCGTATGGAGGATATGGAACGCATGGAACTCCGAATTCTTTTTCCAATACAGGAGGAAATCCATTTGGATAG 2163 0.4124 MSPSKKEEERVERIIRGLLKLPENRRCINCNALGPQYACTTFSTFVCTNCSGLHREFTHRVKSVSMAKFTPDEVTALQAGGNERAKQIYFKGWDPMRHSYPDSNNMHRLRDFIKHVYVDRKYTGEISQETLPRIKMNDKEESYVSKKNSSFRLELVSPRSSPGARNSPSERNEGANLRYVYDESRSPKYVRKYSRYGGLSKSPMKFEVVDDRFRDEDYRTHRQSNLESKIGQLSFDGRKNVDRSQAPVPRSSGEITTKNDSSLQATTSGGEGSIEKKPSEQISNKPRSFNDLSMKSLASETAIVAVQETPSMTQSQASETAIVAVQETPSMTQESESNWASFETSTEENVPKTPNTNTVTSRTTEPTPKAEPTPKANTSSPLDLLLFELSGPFVATTSDNVPTTSTVENASTLDFPSTSTCSEMAQPCNEAPPPQPELDETENPVEVSHGDKPQIEDPIEVSHAHEPPSMHDYPSVSVGWSSATQPIKSPNSVVSNNEPSFSPNTHDSSRAFDELSSRTTSNPTQNTNPDVPSQSGIVKTKSSGRMELPEDLFTASFLSGPAPQAGWKNVQHHVMGYGNNMQYHPNAVPPSGLPVAPKYMNPFEATEGRSKLQGSSSATQASMHGVLPDVSHRTGLMHATSLGSLDTMMPYSASYASPVTGVCFDQVNNEEQLIRSQGFDTFNGGITRYASLDSIQQSYGGYGTHGTPNSFSNTGGNPFG 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05036 720 MobiDBLite consensus disorder prediction 151 173 - -
Vivi4g05036 720 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Vivi4g05036 720 MobiDBLite consensus disorder prediction 701 720 - -
Vivi4g05036 720 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Vivi4g05036 720 MobiDBLite consensus disorder prediction 245 290 - -
Vivi4g05036 720 MobiDBLite consensus disorder prediction 475 538 - -
Vivi4g05036 720 MobiDBLite consensus disorder prediction 398 426 - -
Vivi4g05036 720 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Vivi4g05036 720 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vivi4g05036 720 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vivi4g05036 720 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vivi4g05036 720 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Vivi4g05036 720 MobiDBLite consensus disorder prediction 223 290 - -
Vivi4g05036 720 MobiDBLite consensus disorder prediction 442 467 - -
Vivi4g05036 720 PANTHER ARFGAP/RECO-RELATED 4 720 IPR044820 GO:0005096
Vivi4g05036 720 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Vivi4g05036 720 MobiDBLite consensus disorder prediction 151 179 - -
Vivi4g05036 720 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Vivi4g05036 720 MobiDBLite consensus disorder prediction 398 538 - -
Vivi4g05036 720 CDD ArfGap_AGFG 12 122 - -
Vivi4g05036 720 MobiDBLite consensus disorder prediction 329 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05036 Vivi-Chr4 181021790 181026190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05036 12 117 C2H2 Transcription Factor Family AT4G05330 36.937 1.55e-13 70.9