Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05034 ATGAAAATGATGAAGCATGAGTTGATGGTTACTGCATTAACCATGGTGGTAAGAATAGTTGCACTTGCAGCTGATACCTGCAATGACATTCACACTTGCGGAGATATAGAAATTCCATACCCTTTTGGCATATACAACAACAACCCGGATTGTTTCTCCCGTCGAAAATTAATGCCGCTCAGTTGCAGTAACTCCAAAATTTATGCGGGTAATAACTTGCAAGTATTAGACATAAACATCTCCAAATCTCAAATCGAATTGTGGTTTTATGTCTCCAAGTATTGTGGCATTGGAAAGGATAGTAACACTACACTTACTAGTAACTTCTGTACCATTTCGAGCAAAGATAACAAGTTCCTAACTGTTGGTAATAACAGTTTCGGTTATCTTACCAGTTACACTGATGAAGGAATTAGCTACTCAACAGGGTGCTTAACAAGATCTTTTGGTGATCCAAGAGACATTGATAATGGAAAATGTACCGGTATAGGGTGTTGCCAAGTTGACATTCCTCCTCGAATGACCAATATAAGTATACAAGCTTTTAGTTTTGACAGATCATCACAATCTTGTAGCTATTCATTTGTTGTCAAGAATGGTAACTATACTTTTTCTTCCACTCATTTATCACAAGGTTTACCTGAGAAACTGCCTGTGATTTTTGACTGGACCATTGGTAAGGGAAACTGCACTTCTGCCAAGAATAATGGAGTCGATTATGGGTGCAAGAACAATAGCAAATGTGATGACAAGGACGTAGATTTTGGTTATCGATGCGAATGCAATCCAGGCTATGAAGGAAATCCTTATCATCCCATTGGCTGCACAGACATTGACGAATGTGAAAACGACACACATGAATGCAAAACTAAAGCAAATTGTAAGAACGCTTATGGGAGTCACACATGTTTCTGTCCAAGGGGGTCTTATGGAGATGGAACATTGAAAGGAGGATGTCAACAAAATTCAAGAGTACAAAAAATTGTCCTTGGTGGAGTGGTAGGAGCAACATTGTTTCTTCTATTTGCTGGGACATTTTCATGCTTAATATACCATAAGAGGAAATTCAACAAATTGAAAGAGAAACTCTTTGAGCAGAATGGTGGTTTATTTTTGAGACAAAAACTCTCTGCAAAAGAATATTCCTCCTCTCAAAGTACTCAAATATTCAAACATGATGAACTAAAGAAGGCAACCAAAAACTTTGACCAGAGTTTAATCATAGGCAGAGGTAGTTTTGGTACTGTTTTCAAAGGATTTCTAGATGATAAAAGAATTGTCGCTATCAAAAAGTCCAATCAAATAAACAAAAGTCAAATCCAACAATTCATCGACGAGGTGGTTGTTCTCTCTCAAATAAATCATAGGAATGTGGTCAAACTTTTGGGGTGTTGTTTAGAGACAAAAGTTCCTCTCTTGGTTTATGAATTTGTTTCCAACGGTACCCTATCTAATTTCATACACAGAGAACGCGAAGTGAATAATGAAACCTGGAAAATTCGTCTTAAGATAGCAGCAGAAGTTGCGAGAGCTTTGTCATATCTACATTGGGATGTCACAATACCCATTATCCACAGTGATGTCAAGAGTGCTAATGTTCTCTTGGATGGAACCAACACTGCTAAAGTATCTGATTTTGGAGCTTCAAAATTGGTTCCACTTGATCAAACTCAAGTAGCCACAATGGTGCAAGGAACTTTAGGCTACTTAGATCCAGAGTATATGCAAACTAGTCAATTGACTGATAAAAGTGATGTCTATAGCTTTGGAGTAGTCCTTGTGGAACTGCTTACAGGAGAGAAACCTTTTTGTTTTGGTGGGCCAGAAAATAGTAGAAGTCTTGCCATGCACTTTCTGTCTTGCTTGAAAAAAGATAATGTGTTTGAAGTTATTCAAGATGGTATGTTGAACAAGGAAAATGAACAAGAGATCAAGGAAGTTTCTGTTCTTGCGGCAAAGTGTTTGAGACTAAGAGGGGAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAATTGGAGGGAATGAGGTTAATGGATAAGCAATCTTGGATCAAGGATGACATAAATATAGAGGAGAGTAAGTACTTACTTTGTAAGGGGCAACGTGGCAATGGATCCACTTATTGA 2127 0.3803 MKMMKHELMVTALTMVVRIVALAADTCNDIHTCGDIEIPYPFGIYNNNPDCFSRRKLMPLSCSNSKIYAGNNLQVLDINISKSQIELWFYVSKYCGIGKDSNTTLTSNFCTISSKDNKFLTVGNNSFGYLTSYTDEGISYSTGCLTRSFGDPRDIDNGKCTGIGCCQVDIPPRMTNISIQAFSFDRSSQSCSYSFVVKNGNYTFSSTHLSQGLPEKLPVIFDWTIGKGNCTSAKNNGVDYGCKNNSKCDDKDVDFGYRCECNPGYEGNPYHPIGCTDIDECENDTHECKTKANCKNAYGSHTCFCPRGSYGDGTLKGGCQQNSRVQKIVLGGVVGATLFLLFAGTFSCLIYHKRKFNKLKEKLFEQNGGLFLRQKLSAKEYSSSQSTQIFKHDELKKATKNFDQSLIIGRGSFGTVFKGFLDDKRIVAIKKSNQINKSQIQQFIDEVVVLSQINHRNVVKLLGCCLETKVPLLVYEFVSNGTLSNFIHREREVNNETWKIRLKIAAEVARALSYLHWDVTIPIIHSDVKSANVLLDGTNTAKVSDFGASKLVPLDQTQVATMVQGTLGYLDPEYMQTSQLTDKSDVYSFGVVLVELLTGEKPFCFGGPENSRSLAMHFLSCLKKDNVFEVIQDGMLNKENEQEIKEVSVLAAKCLRLRGEERPSMKEVAMELEGMRLMDKQSWIKDDINIEESKYLLCKGQRGNGSTY 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05034 708 Pfam Protein tyrosine and serine/threonine kinase 407 672 IPR001245 GO:0004672|GO:0006468
Vivi4g05034 708 ProSiteProfiles EGF-like domain profile. 277 315 IPR000742 -
Vivi4g05034 708 SMART egf_5 229 276 IPR000742 -
Vivi4g05034 708 SMART egf_5 280 320 IPR000742 -
Vivi4g05034 708 SUPERFAMILY EGF/Laminin 277 312 - -
Vivi4g05034 708 ProSitePatterns Protein kinases ATP-binding region signature. 408 431 IPR017441 GO:0005524
Vivi4g05034 708 Pfam Wall-associated receptor kinase galacturonan-binding 27 86 IPR025287 GO:0030247
Vivi4g05034 708 CDD EGF_CA 277 312 - -
Vivi4g05034 708 SMART serkin_6 402 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05034 708 FunFam Fibrillin 2 272 316 - -
Vivi4g05034 708 FunFam Wall-associated receptor kinase 2 371 477 - -
Vivi4g05034 708 Gene3D Laminin 228 318 - -
Vivi4g05034 708 ProSiteProfiles Protein kinase domain profile. 402 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05034 708 Gene3D Phosphorylase Kinase; domain 1 369 477 - -
Vivi4g05034 708 SUPERFAMILY Protein kinase-like (PK-like) 382 673 IPR011009 -
Vivi4g05034 708 FunFam Wall-associated receptor kinase 2 478 695 - -
Vivi4g05034 708 SMART egfca_6 277 320 IPR001881 GO:0005509
Vivi4g05034 708 CDD EGF_CA 242 267 - -
Vivi4g05034 708 Pfam Calcium-binding EGF domain 277 310 IPR001881 GO:0005509
Vivi4g05034 708 CDD STKc_IRAK 408 675 - -
Vivi4g05034 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 523 535 IPR008271 GO:0004672|GO:0006468
Vivi4g05034 708 Gene3D Transferase(Phosphotransferase) domain 1 478 695 - -
Vivi4g05034 708 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 679 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05034 Vivi-Chr4 181008427 181011090 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05034 3 697 Receptor kinase-like Gene Family AT1G21230 42.382 2.10e-172 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vivi4g05034 PK_Tyr_Ser-Thr 1.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05034 - - mtr:25481909 896.73