Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05032 ATGAAAATGATGAAGCATGTGTTAATGATTAATGCATTAACCATGATGGTAGGAATAGCTGCACTTGCAGCTGATACCTGCAATGATATTATTCACACTTGTGGAGATGTTGAAATTCCATACCCGTTTGCCATATACAACAACAACCCGGATTGTTTCTCCCATCGACAATTACTTAAGCTCTACTGCAACAAATCCAAAATTTATGCGGGTAAGAACTTGCAAGTATTAAATATAAACATCTCCAAATCTCAAATCGAATGGTTGTTGGATGTCTCCAAGTATTGTGGTAAGGATAATGTTAATAATTATGAAAACACGCTTACCACAGCTTCTTATACCATTTCAAGCAAAGATAACAAGTTCATAACTGTTGGTAATAACAGTTACGGTTATCTTAACAGTTTCAGTGATGATGGCGGTAAATATTCAACAGGTTGCTTAACAAGATCTTTTGGTGATCCAAGAGACATTGATAATGGAACATGTTCGGGTATAGGGTGTTGCCAAGTTGACATTCCTCCTCGAATGACCAATATAAGTGTACAAGCTTACAATTTTAACAAATCATCCGAATCTTGTAGCTACTCGTTTGTTGTAAAGAATGATAGCTATACTTTTTCTTCCACTCATTTATCAAAAGGTTTACCTCAAAGGGAATTTCCTGCGGTTTTTGACTGGACCATTGGTGACGAAAACTGCTCTTCTGCCAAGAATAATGGAGTCAACTATGGGTGCAAGAGCAATAGCCACTGTGATGACAAGGATACATATTTTGGTTATCGATGCAAATGCAATCCAGGCTATGAAGGAAATCCTTATAATCCCATTGGCTGCACAGACATTGACGAATGTGAAATCGGCCCACATGAATGCAAAACTAAAGAAAATTGTAGGAACACTGATGGGAATCACACATGTTTTTGTCCAAAGGGGTCTTCTGGAGATGGAACATTGAAAGGAGGGTGTCAACAAAATTTAAATACAATAGTACTTCCTATTGTCCTTGGAGCAGGAGCAGTATTTACTGTTCTATTTGCGGGGATAATTTTCTATTTACTAAACCAAAAAAGGAAACTTAACAAATTGAAAGAAAAATTTTATAAGCAGAATGGAGGTTCTATTTTGGAACAGAAACTTACCCAAAGACAAGACTCATCTCAAATAGCTCATATTTTTAAAGAAAATGAACTGAGGAAAGCCACAAACAACTATGATGAGAGCTTAATCGTTGGTAGGGGAGGTTTTGGTACAGTTTTCAAAGGGGAACTAGAAGATAATAGAATCGTTGCTATCAAAAAGTCCAAAACAATAGATGAAAGCCAAGTCGAGCAATTCATTAATGAGGTGGATGTTGTCTCTCGAATAAATCACAGGAATGTGGTTAAACTGTTGGGATGCTGTCTAGAAACAGAAGTTCCTTTGTTGGTTTATGAATTTGTTAGCAATGGCACCCTTTCTGAATTTATACGCACAGAAATAGGTAAGGTGAATAATGTATCATGGAAAACTCGTCTTAAGATAGCAGCAGAGGTAGCTGGAGCTTTGTCATATCTACATTCAGCTGCCTCAGTACCTATTATCCACAGAGATGTCAAGAGCGATAACATTCTTTTAGATGAAACCAACACTGCGAAAGTATCTGATTTTGGAGCTTCAAGATTGGTTCCACTTGATCAAATAGAGGTAGCCACAATGGTGCAAGGAACTATTGGTTATTTAGATCCAGAGTATATGCAAACAAGCCAATTGACAGAGAAAAGTGATGTCTATAGCTTTGGAGTAGTTCTTGTGGAATTGTTAACAGGGGAGAAGCCTTTTTGTGCTGGTAGGCCGGAAGAGAGAAGAAGTTTTTCTATGTACTTTTTATCTTGCTTGAAAAAGGATAGTTTGCATGAAGTTATTCATGATGGTATGTGGAATGAAGAAAACAAACAAGAGATCAAGGAGGTTTCTGTTCTTGCGGCAAAGTGTTTGAGACTAAGAGGAGAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAATTGGAGGGACTGAGGTTAATGAATAAGCACTCTTGGATCAACGAAGACATAAATGTAGAGGAGAGTCGGTACTTGCTTCATGAATCATCTTCTAGAATTGATGAACTTGGTGATAGCAGCAAACAAGGAGATTATGGGTATGACAGCTTGAAAGATCATGTATTGATTGCCTTGGATGATGGAAGATGA 2214 0.3762 MKMMKHVLMINALTMMVGIAALAADTCNDIIHTCGDVEIPYPFAIYNNNPDCFSHRQLLKLYCNKSKIYAGKNLQVLNINISKSQIEWLLDVSKYCGKDNVNNYENTLTTASYTISSKDNKFITVGNNSYGYLNSFSDDGGKYSTGCLTRSFGDPRDIDNGTCSGIGCCQVDIPPRMTNISVQAYNFNKSSESCSYSFVVKNDSYTFSSTHLSKGLPQREFPAVFDWTIGDENCSSAKNNGVNYGCKSNSHCDDKDTYFGYRCKCNPGYEGNPYNPIGCTDIDECEIGPHECKTKENCRNTDGNHTCFCPKGSSGDGTLKGGCQQNLNTIVLPIVLGAGAVFTVLFAGIIFYLLNQKRKLNKLKEKFYKQNGGSILEQKLTQRQDSSQIAHIFKENELRKATNNYDESLIVGRGGFGTVFKGELEDNRIVAIKKSKTIDESQVEQFINEVDVVSRINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSEFIRTEIGKVNNVSWKTRLKIAAEVAGALSYLHSAASVPIIHRDVKSDNILLDETNTAKVSDFGASRLVPLDQIEVATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGEKPFCAGRPEERRSFSMYFLSCLKKDSLHEVIHDGMWNEENKQEIKEVSVLAAKCLRLRGEERPSMKEVAMELEGLRLMNKHSWINEDINVEESRYLLHESSSRIDELGDSSKQGDYGYDSLKDHVLIALDDGR 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05032 737 Gene3D Laminin 231 322 - -
Vivi4g05032 737 ProSitePatterns Protein kinases ATP-binding region signature. 411 434 IPR017441 GO:0005524
Vivi4g05032 737 FunFam Fibrillin 2 276 320 - -
Vivi4g05032 737 FunFam Wall-associated receptor kinase 2 481 699 - -
Vivi4g05032 737 FunFam Wall-associated receptor kinase 2 375 480 - -
Vivi4g05032 737 Pfam Protein tyrosine and serine/threonine kinase 411 676 IPR001245 GO:0004672|GO:0006468
Vivi4g05032 737 CDD EGF 243 274 - -
Vivi4g05032 737 SMART serkin_6 405 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05032 737 Pfam Wall-associated receptor kinase galacturonan-binding 27 89 IPR025287 GO:0030247
Vivi4g05032 737 PIRSF SRK 45 717 IPR024171 GO:0004674
Vivi4g05032 737 Gene3D Phosphorylase Kinase; domain 1 369 480 - -
Vivi4g05032 737 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 685 IPR045274 GO:0007166
Vivi4g05032 737 Gene3D Transferase(Phosphotransferase) domain 1 481 693 - -
Vivi4g05032 737 CDD STKc_IRAK 411 679 - -
Vivi4g05032 737 SMART egfca_6 281 324 IPR001881 GO:0005509
Vivi4g05032 737 CDD EGF_CA 281 316 - -
Vivi4g05032 737 ProSiteProfiles Protein kinase domain profile. 405 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05032 737 Pfam Calcium-binding EGF domain 281 316 IPR001881 GO:0005509
Vivi4g05032 737 ProSiteProfiles EGF-like domain profile. 281 319 IPR000742 -
Vivi4g05032 737 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Vivi4g05032 737 SUPERFAMILY Protein kinase-like (PK-like) 387 676 IPR011009 -
Vivi4g05032 737 SUPERFAMILY EGF/Laminin 275 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05032 Vivi-Chr4 180993062 180995913 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05032 3 737 Receptor kinase-like Gene Family AT1G21230 43.025 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vivi4g05032 PK_Tyr_Ser-Thr 3.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05032 - - psat:127095916 1186.02