Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05030 ATGCATCCATTACTAAAGTTTGCTGCATTAGCCCTGTTTGTAGAAGCAGTTACATCTGATCATCAACCCCAACAAGCCCTACCAGGCTGCAAATCCACTTGTGGAGACATACAAATTCCATATCCATTTGGCATAGGAAACTCAACAACACAAAATCACACACCATGTTACATGAATTCCAAATTTATACTCACTTGTAAAAACAACTCCAAATTGATCCGTGGTACCAATATTCCAGTCCTAGACATAAATCCACTAGGCCAAATGGTGTTTTCGTTTTCCGTCTCGTATTTTTGCACTAATAATAGTAGTAAGAGTACTGCAAATTCTCCTTTTCTTAGAGTTCCTTCTTTGACAATTTCAAGTACAGAAAACAAATTCATAACCGTCGGTTGCGACAGTTATGGATATCTTAATAGTAATTTCAAGGGTGCCACTTATTCAACAGGTTGCTTAACAAGATGTTATGATTATGATCCTAAAATGGTTATTGGCAATAACACTGGAAAATGCACTGGTTTAGGCTGTTGCCAAGTGGATATTCCTCCACTTATGAGAAATATCACTATCCAATCATCTCAATTCCCAGATTCTACACCATCTGTGAAACATTATTGTAGCTATTCCTTCATTGCAAAACAAGGATCTTACAGTTTTTCTGTAGATGATTTGAATAATCTACCTAAGAAAAGATTTCCCATGGTTGTTAATTGGGCTGTGTCAAGTGAGTCATGTCAAATAGCCCAGACAAAAGCTAATTATGCATGCAAGGAAAATAGTGAGTGTGTCGATAACGATCTGGATTATGACGGTTATAGATGCAACTGTTCCAAAGGTTTTGAAGGAAATCCATACCTTCCTGGAGGCTGCTCAGACATAGACGAATGCGCAACAGAATATCATGGATGCAAAAGTAAAGCAAATTGTAATAACACTTTTGGGAATTACACTTGTTTCTGTCCTGAGGGGGAAATCGGAGATGGAACGGAGGGAGGAGGATGCCAACTAGAACATAATGAAAATGCCAATAGAATAGTACTACCTACTGTCCTTGGAGCAGGAGCAGTATTTATTGTTCTATTTGTGATGATAATTTTCTATTCAATAAACCAAAAAAGGAAACTTACCAAATTGAAAGAGAAATTCTATAAGCAAAATGGAGGTTCTATTTTGGAACAGAAACTTAGTCAAAGACAAGACTCATCATCATCTCAAATAGCTCATATTTTCAAAGAAAATGAACTAAAGAAAGCCACAAACAACTTTGATGAGAGTTTAATCATAGGTAGAGGAGGTTTTGGCACAGTTTTCAAAGGGGAACTAGAAGATAAGAGAATTGTTGCTATAAAAAAATCCAAAACTATAGACGAAAGCCAAATTGAACAATTCATCAATGAGGTTGATGTTGTCTCTCAAATAAATCACAGAAATGTGGTCAAACTCTTGGGGTGTTGTCTAGAAACAGAAGTTCCTTTGTTGGTTTATGAATTTGTTTCCAATGGTACCCTTTCTGAACTTATACATAAAGAAATAGGTAAGGTGAATAATGTATCGTGGAAAACTCGTCTTAAGATCGCGGCCGAGGTAGCTGGAGCTTTGTCATATCTACATTCAGCCGCCTCAATACCGATTATCCACAGAGATGTCAAGTGTGATAACATTCTCTTGGATGGAACCAACACTGCGAAAGTATCTGATTTTGGAGCTTCAAGATTGGTTCCACTCGACCAAATGGAAGTAGCCACAATGGTGCAAGGAACTATTGGCTACTTAGACCCGGAGTATATGCAAACAAGCCAATTGACTGAGAAAAGCGATGTATATAGCTTTGGAGTAGTTCTCGTGGAGCTGCTAACGGGGGAGAAGCCTTTTAGTTTTGGGAGGGCAGAAGACAGAAGAAGTCTTGCTATGCACTTTCTGTCTTGCTTGAAAAAGGATAATGTGTTTGAAGTTATTCAAGATGGTTTGTTGAACGAAGAAAACGAACGAGAGATCAAGGAGGTAGCTGTTCTTGCAGCAAAGTGTTTGAGACTAAGAGGGGAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAATTGGAGGGAATGCAATTAATAGATAAGCAATCTTGGATCTATGAAGACGTAAATATAGAGGAGAGTCGCTACTTGCTTCATGAATCATCTTCTAGCCTTTATGAACTTGGTGATAGCAGCAAACAAGGAGATTATGGGTATGACAGCTTGAAAGATCATGTACTGATTGCCTTGGATGATGGAAGATGA 2265 0.3823 MHPLLKFAALALFVEAVTSDHQPQQALPGCKSTCGDIQIPYPFGIGNSTTQNHTPCYMNSKFILTCKNNSKLIRGTNIPVLDINPLGQMVFSFSVSYFCTNNSSKSTANSPFLRVPSLTISSTENKFITVGCDSYGYLNSNFKGATYSTGCLTRCYDYDPKMVIGNNTGKCTGLGCCQVDIPPLMRNITIQSSQFPDSTPSVKHYCSYSFIAKQGSYSFSVDDLNNLPKKRFPMVVNWAVSSESCQIAQTKANYACKENSECVDNDLDYDGYRCNCSKGFEGNPYLPGGCSDIDECATEYHGCKSKANCNNTFGNYTCFCPEGEIGDGTEGGGCQLEHNENANRIVLPTVLGAGAVFIVLFVMIIFYSINQKRKLTKLKEKFYKQNGGSILEQKLSQRQDSSSSQIAHIFKENELKKATNNFDESLIIGRGGFGTVFKGELEDKRIVAIKKSKTIDESQIEQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSELIHKEIGKVNNVSWKTRLKIAAEVAGALSYLHSAASIPIIHRDVKCDNILLDGTNTAKVSDFGASRLVPLDQMEVATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGEKPFSFGRAEDRRSLAMHFLSCLKKDNVFEVIQDGLLNEENEREIKEVAVLAAKCLRLRGEERPSMKEVAMELEGMQLIDKQSWIYEDVNIEESRYLLHESSSSLYELGDSSKQGDYGYDSLKDHVLIALDDGR 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05030 754 Pfam Wall-associated receptor kinase galacturonan-binding 30 88 IPR025287 GO:0030247
Vivi4g05030 754 ProSitePatterns Protein kinases ATP-binding region signature. 428 451 IPR017441 GO:0005524
Vivi4g05030 754 SMART serkin_6 422 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05030 754 ProSiteProfiles Protein kinase domain profile. 422 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g05030 754 CDD STKc_IRAK 428 696 - -
Vivi4g05030 754 SUPERFAMILY EGF/Laminin 292 328 - -
Vivi4g05030 754 ProSitePatterns Calcium-binding EGF-like domain signature. 292 318 IPR018097 GO:0005509
Vivi4g05030 754 FunFam Fibrillin 2 288 332 - -
Vivi4g05030 754 SMART egf_5 295 335 IPR000742 -
Vivi4g05030 754 SMART egf_5 244 291 IPR000742 -
Vivi4g05030 754 Gene3D Laminin 243 332 - -
Vivi4g05030 754 SMART egfca_6 292 335 IPR001881 GO:0005509
Vivi4g05030 754 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 309 320 IPR000152 -
Vivi4g05030 754 Gene3D Phosphorylase Kinase; domain 1 386 497 - -
Vivi4g05030 754 CDD EGF_CA 292 323 - -
Vivi4g05030 754 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 697 IPR045274 GO:0007166
Vivi4g05030 754 FunFam Wall-associated receptor kinase 2 390 497 - -
Vivi4g05030 754 SUPERFAMILY Protein kinase-like (PK-like) 398 694 IPR011009 -
Vivi4g05030 754 ProSitePatterns Serine/Threonine protein kinases active-site signature. 544 556 IPR008271 GO:0004672|GO:0006468
Vivi4g05030 754 FunFam Wall-associated receptor kinase 2 498 716 - -
Vivi4g05030 754 ProSiteProfiles EGF-like domain profile. 292 330 IPR000742 -
Vivi4g05030 754 Gene3D Transferase(Phosphotransferase) domain 1 498 710 - -
Vivi4g05030 754 Pfam Calcium-binding EGF domain 292 323 IPR001881 GO:0005509
Vivi4g05030 754 Pfam Protein tyrosine and serine/threonine kinase 427 693 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05030 Vivi-Chr4 180934064 180937255 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05030 10 754 Receptor kinase-like Gene Family AT1G21230 43.989 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vivi4g05030 PK_Tyr_Ser-Thr 3.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05030 - - tpra:123893723 1199.5