Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vivi4g05027 | ATGGGTGAGGTGGCAGTGTTGCACTCTGAGCCTCTGCACTTTGAATGCAATGACACCAAACATATGACAGAAGATGTCTATCCTCCAAATTCAAACCCGGAATCGTTGCCCGGAGAAGAATCAAGTCAATCTATAAACACAAATGATTTACAAGATAAAGGATATATGGAACATGGATGCCAACACTACCGGAGAAGATGTCGAATCAGGGCCCCCTGTTGCAATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATGATATCAACATAGATTCAAAGCTTAGACATGACATGCCCCGACACCAAATCAAACAGGTGATATGTTCACTTTGTGGCACTGAACAAGAGGTTCAGCAAAACTGTACTAATTGTGGTGTTTGTATGGGCAAGTACTTCTGTCAGACATGCAAGCTCTTTGACGATGATATATCTAAGCAGCAGTACCATTGTAATGGCTGTGGAATTTGCAGAACTGGTGGACATGAGAATTTCTTCCATTGTAATAAGTGTGGTTGTTGCTACTCAACTCTGCTGAAAAACATTCACCCCTGTGTGGAAGGAGCAATGCATCATGATTGCCCCGTTTGTTTTGAGTATTTGTTTGATTCAAGAAATGATGTCATTGTTATGCCGTGTGGACATACAATCCATAAAAACTGTCTGAATGAAATGAGAGAACATTACCAGTATGCATGCCCTCTCTGTTCCAAGTCTGTCTGTGATATGTCTAAGGTTTGGGAGAAATTGGACATGGAGATTGCTGCTACGCCAATGCCAGAGTCATATCAGAATAAAATGGTTTGGATTCTGTGCAATGACTGCGGAAAAACTTGTCATGTTAAGTTCCATTTTGTGGCTCAAAAATGCCTCAACTGCAAGTCATACAACACGCGACAGACGAGAGGCTGA | 918 | 0.4172 | MGEVAVLHSEPLHFECNDTKHMTEDVYPPNSNPESLPGEESSQSINTNDLQDKGYMEHGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDSKLRHDMPRHQIKQVICSLCGTEQEVQQNCTNCGVCMGKYFCQTCKLFDDDISKQQYHCNGCGICRTGGHENFFHCNKCGCCYSTLLKNIHPCVEGAMHHDCPVCFEYLFDSRNDVIVMPCGHTIHKNCLNEMREHYQYACPLCSKSVCDMSKVWEKLDMEIAATPMPESYQNKMVWILCNDCGKTCHVKFHFVAQKCLNCKSYNTRQTRG | 305 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vivi4g05027 | 305 | SUPERFAMILY | CHY zinc finger-like | 57 | 131 | IPR037274 | GO:0008270 | |
Vivi4g05027 | 305 | Pfam | CHY zinc finger | 60 | 141 | IPR008913 | GO:0008270 | |
Vivi4g05027 | 305 | Gene3D | - | 267 | 305 | - | - | |
Vivi4g05027 | 305 | ProSiteProfiles | Zinc finger CHY-type profile. | 53 | 129 | IPR008913 | GO:0008270 | |
Vivi4g05027 | 305 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 131 | 195 | IPR017921 | - | |
Vivi4g05027 | 305 | SUPERFAMILY | Zinc hairpin stack | 132 | 189 | IPR037275 | - | |
Vivi4g05027 | 305 | CDD | RING-H2_Pirh2-like | 195 | 239 | - | - | |
Vivi4g05027 | 305 | ProSiteProfiles | Zinc finger RING-type profile. | 196 | 239 | IPR001841 | - | |
Vivi4g05027 | 305 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 42 | 304 | - | - | |
Vivi4g05027 | 305 | Pfam | Ring finger domain | 195 | 238 | IPR001841 | - | |
Vivi4g05027 | 305 | MobiDBLite | consensus disorder prediction | 24 | 50 | - | - | |
Vivi4g05027 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 190 | 241 | IPR013083 | - | |
Vivi4g05027 | 305 | MobiDBLite | consensus disorder prediction | 18 | 50 | - | - | |
Vivi4g05027 | 305 | Pfam | Zinc-ribbon | 243 | 301 | IPR039512 | - | |
Vivi4g05027 | 305 | SMART | ring_2 | 196 | 238 | IPR001841 | - | |
Vivi4g05027 | 305 | SUPERFAMILY | RING/U-box | 195 | 243 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vivi4g05027 | Vivi-Chr4 | 180916503 | 180921691 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vivi4g05027 | 58 | 305 | C2H2 Transcription Factor Family | AT3G18290 | 39.370 | 3.97e-53 | 185 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vivi4g05027 | 4 | 180916503 | 180921691 | Vivi4g05027 | 4 | 180916503 | 180921691 | ECH | |
Vivi4g05027 | 4 | 180916503 | 180921691 | Vivi4g05027 | 4 | 180916503 | 180921691 | PCT |