Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05024 ATGTCAAGACCTCCCATTTTTGTTAATGACTTGGAAATAGGATGCCAGGTTTGGAAAATGGGTATCCGAGTCACTGATTTATGGACTGTCAAAGAGAGGAATGGCAAGTTACATGTGGAGCTAATCATTCAAGATGCAAAGGGTCAACAGATTCAAGTTGTTACACGTCCGAGAGAATACAACCATTGGATGCAAGTGTTGACCGAACATGATACATATACACTGTATAATGGTGAACCTCTGAAAAATGATATCCAATTGGAGGCATGTGATAACCCAATTAAACTCATGTTCAACCAAGCAACCACACTTTATAAAAATCCGCAACACAACATCCCTCCTCACAAATTTGATTTCAAGCCTATACCTGATTTTATTTCTGGAAGTTTCAAGCATGATATGTTGTATGATGTCATCGGAATCTTCAATGAAGTGACTCGAAAACAAACTGTCGGCAACAACAAAAAGGCTTGTGCTAACATTTTACTTAGTGACTACCACGATAATGTCATTGAAGCTGCTCTCTGGGATTCTTTTGCTTCAAAGCTATTTGACTTCCTCAACTCAAATTCACATGCCACTCCTATCATTATTGTGCTAACCCATGGTTGGTGCAAAAGAAGTGGTGCAAAATCCACTTTTTCTAATGCATGGAATGGAAGTAAACTTCTCATCAACTATGATCATCCACAAGTGCACGATTACAGAACTAAGTTAGGCGATTATAAACCATGCCCACGGGCTTCTCAAAGTGTGTCGCAAACATCTGAATATGATAAGTTTTGGACCAACTCTTTGGAATTCAAGAGCATCTCTGAGATTAAAGGAAAAAATCAGGTTTCTTTGTTTATTTCTTGCCATTACTATGATAAACTATCCAGAACTGCTATTTCCTCAGTGTTACCATTTTCCTTTGTTCATAACAAGGATTGTTTCGCAACAACCATGGGCACAACTATGAGGTTCAAGATGGCGTCGTTCGGATGGTACTATAATTGCTGTTCAGGATGCAGCAGGGAAATAAAAGATCCTGAACTACCGTTTCAGTGCAAATGTGGTGGCCCCAATATAGTTGAAGTCACAAAATACAAGCTGGAAATTGAAGTTGAACACGGCGGCGTTGATTGTACCTTCATGTTTTGGGACAAAGATTGTGTTCCAATCGTTGGGATGACTGCTGATAAATTAAGGGCTATAACGAAAGAGGCTGGTGAAGATCACCCACAGATATACCCTACTTACCTTGATGTTCTTCTGGAGAAAAAGCTCACTTTCCGTGTGAAGTACACCACCAACTTTGGTCAGTGCTCCATAGTCCAGATTAATCCTGATAAACAAGTTTACAAAAGGATCGATGAATTCTTGAACCCAAATGAGCACACTTCAAATGTCTGCGTTACACAAAATACCGATAAGGCTAACATGAAAACTCCGACTGTGGCTGTTGCGGATAATTCAAAGGTTCCTGAATTGCCCGCTGAAAATGTTGTGGCTGCTCAATCTAATCCGGCGCTGCCTATATCTCCAATTAACCTGAATTCGAAACTTGCTACTGAAGTTACGATGTCTGGAACTAGCTCTACAAACACGCCAATGAAGCGGGATGCTGCTTCCATAGTGTTAGAAGATGCCTCTCCGATCAAGTATCTAACACCTCAGAATTCTGCCACCAAAGTAAAACACATGAAGACGGAGTGA 1698 0.404 MSRPPIFVNDLEIGCQVWKMGIRVTDLWTVKERNGKLHVELIIQDAKGQQIQVVTRPREYNHWMQVLTEHDTYTLYNGEPLKNDIQLEACDNPIKLMFNQATTLYKNPQHNIPPHKFDFKPIPDFISGSFKHDMLYDVIGIFNEVTRKQTVGNNKKACANILLSDYHDNVIEAALWDSFASKLFDFLNSNSHATPIIIVLTHGWCKRSGAKSTFSNAWNGSKLLINYDHPQVHDYRTKLGDYKPCPRASQSVSQTSEYDKFWTNSLEFKSISEIKGKNQVSLFISCHYYDKLSRTAISSVLPFSFVHNKDCFATTMGTTMRFKMASFGWYYNCCSGCSREIKDPELPFQCKCGGPNIVEVTKYKLEIEVEHGGVDCTFMFWDKDCVPIVGMTADKLRAITKEAGEDHPQIYPTYLDVLLEKKLTFRVKYTTNFGQCSIVQINPDKQVYKRIDEFLNPNEHTSNVCVTQNTDKANMKTPTVAVADNSKVPELPAENVVAAQSNPALPISPINLNSKLATEVTMSGTSSTNTPMKRDAASIVLEDASPIKYLTPQNSATKVKHMKTE 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05024 565 Gene3D - 255 455 IPR012340 -
Vivi4g05024 565 SUPERFAMILY Nucleic acid-binding proteins 117 237 IPR012340 -
Vivi4g05024 565 SUPERFAMILY Nucleic acid-binding proteins 305 433 IPR012340 -
Vivi4g05024 565 Gene3D - 110 243 IPR012340 -
Vivi4g05024 565 SUPERFAMILY Nucleic acid-binding proteins 7 109 IPR012340 -
Vivi4g05024 565 Gene3D - 5 107 IPR012340 -
Vivi4g05024 565 CDD RPA1_DBD_B_like 137 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05024 Vivi-Chr4 180842565 180866860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05024 18 275 Core DNA Replication Machinery Family AT2G06510 23.297 6.22e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05024 - - vvo:131598441 1174.07