Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05015 ATGGGTGAGGTGGCAGTGTTGCACTCTGAGCCTTTGCACTTTGAATGCAATGACACCAAACCTATGACAGAAGATGTCTATCCTCCAAATTCAAATCCAGAATCCTTGCCCGGAGAAGAATCAAGTCAATCTATAAACACAAATGATTTACAAGATAAAGGATATATGGAACATGGATGCCAACACTACAGGAGAAGATGTCGAATCAGGGCCCCCGGTTGCAATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATGATATCAACATAGATTTGAAGCATAGACATGACATGCCCCGACACCAAGTTAAACAGGTGATATGTTCACTTTGTGGCACTGAACAAGAGGTTCAGCAAAACTGTACTAATTGTGGTGTTTGTATGGGCAAGTACTTCTGTCAGACATGCAAGCTCTTTGACGATGATATATCTAAGCAGCAGTACCATTGTAATGGCTGTGGAATTTGCAGAACTGGTGGACATGAGAATTTCTTCCATTGTAATAAGTGTGGTTGTTGCTACTCAACTCTGCTGAAAAACAGTCACCCCTGTGTGGAAGGAGCAATGCATCATGATTGCCCTGTTTGTTTTGAGTATTTGTTTGATTCAAGAAATGATGTCATTGTTATGCCGTGTGGACATACAATCCATAAAAGCTGTCTGAATGAAATGAGAGAACATTACCAGTATGCATGCCCTCTCTGTTCAAAGTCTGTCTGTGATATGTCAAAAGTTTGGGAGAAATTGGACATGGAGATTGCTGCCACGGCAATGCCAGAGTCATATCAAAATAAAATGGTTTGGATTCTGTGCAATGACTGCGGAAAAACTTGTCATGTTAAGTTCCATTTTGTGGCTCAAAAATGCCTCAACTGCAAGTCATACAATACGCGACAGACGAGAGGTTGA 918 0.4118 MGEVAVLHSEPLHFECNDTKPMTEDVYPPNSNPESLPGEESSQSINTNDLQDKGYMEHGCQHYRRRCRIRAPGCNEIFDCRHCHNEAKNDINIDLKHRHDMPRHQVKQVICSLCGTEQEVQQNCTNCGVCMGKYFCQTCKLFDDDISKQQYHCNGCGICRTGGHENFFHCNKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFDSRNDVIVMPCGHTIHKSCLNEMREHYQYACPLCSKSVCDMSKVWEKLDMEIAATAMPESYQNKMVWILCNDCGKTCHVKFHFVAQKCLNCKSYNTRQTRG 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05015 305 SMART ring_2 196 238 IPR001841 -
Vivi4g05015 305 MobiDBLite consensus disorder prediction 17 50 - -
Vivi4g05015 305 Pfam Zinc-ribbon 243 301 IPR039512 -
Vivi4g05015 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 269 IPR013083 -
Vivi4g05015 305 CDD RING-H2_Pirh2-like 195 239 - -
Vivi4g05015 305 Gene3D - 270 305 - -
Vivi4g05015 305 Pfam CHY zinc finger 60 141 IPR008913 GO:0008270
Vivi4g05015 305 SUPERFAMILY CHY zinc finger-like 57 131 IPR037274 GO:0008270
Vivi4g05015 305 ProSiteProfiles Zinc finger CHY-type profile. 53 129 IPR008913 GO:0008270
Vivi4g05015 305 Pfam Ring finger domain 195 238 IPR001841 -
Vivi4g05015 305 MobiDBLite consensus disorder prediction 24 50 - -
Vivi4g05015 305 SUPERFAMILY RING/U-box 195 243 - -
Vivi4g05015 305 ProSiteProfiles Zinc finger RING-type profile. 196 239 IPR001841 -
Vivi4g05015 305 SUPERFAMILY Zinc hairpin stack 132 189 IPR037275 -
Vivi4g05015 305 ProSiteProfiles Zinc finger CTCHY-type profile. 131 195 IPR017921 -
Vivi4g05015 305 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 42 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05015 Vivi-Chr4 180498634 180504059 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05015 58 305 C2H2 Transcription Factor Family AT3G18290 39.130 2.46e-52 182