Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05010 ATGGATGCCAAGATAGACACAGCAGAAAAGAAGCTGCTGGTTGATATTGTAAAATTGGTACAACAAAAAGGCATGAAGGGTAAAATGGGAGGCTGGAAAGAATTCTTGAACAGTCATGATAAGAAATTTGGGGCATCTTTGAGTGATCCATCAAAGAGGTCCCATCAGCTTTTGGCTCAATTTCTCAAGACATTCTCAACTCAAGAGGATTTAAAGTTTTTTGATAACATCATGCGCTATCCTTCAAATCAACGCACGATAGAGCGACTGAAAGATAGATCTCATGATTTCCCTGAGCAGAGTCTAGTCCAAGCAACTCGCCAGCACCCTCGGCACGCAAAGGATTATTCATTGCCATCCACTGACAAGGGATGGTTAGTGATAAACATTAAAGAGAAGTCCAAGGGGATAAAATCTACTGCAATGCTTGCTGTTGATTGTGAAATGGTTCTTTGCGAAGATGGGACTGAAGCATTAGTCGAAGTTTGTGTTGTAGATCACAATTTAGAGGTCAAACTACGCGAACTTGTTAAACCGGAGAAAGCAATCAAAGACTACAGAACAGAGATTACCGGCGTCTCTTCTAAAGATCTAGAGACCGTGACTCGCTCCTTAGCTGATATACAAAAATTGATGAAGAAGTGGTTATCCAGTGGAGCCATATTAGTTGGACACAGTTTGCATAATGATCTACGCGTGCTGAAGCTATATTATGATAGAGTGATCGACACTGCATACATTTTCCAACCCATGGATGGAGCTACTCACAGGAGACCTTCATTAAATAGTTTGTGTCAGGCTGTGTTAGGCCACGAAGTTCGGAAAAAGGGTGCTTCACATGATTGTCAAGATGATGCATGTGCAACAATGAAACTTGTTCTTGCAAAGATCAAACATGATATTGATAAGCCATTTCCGTTAACGGTTCAAGAGCTTGTTTCAGAAAGTGAGATGTCGAAGCTGCTTATTCACAGAATACCAACCACTGTGACCTGTGAAACGCTACACGAAATTGTTCCTGGAGACTTCACAATAGAAGAAAAGTCTACCCGGAGTGGTGCCGCAGACAAGTATTCTGCCTTAGCTATCTTTAAGAGTCAACGAGAAGCACATGAGGCATATGAAAATGTGCAAGGCATGCAAAGAGAGGATTCAAATGGGCTTCAACAGAAACGTGTAACATGTCAGCTGAGTACGGGTATAAATGTCTGTGTATTTGTTCGGAAAATGAGAATTGATAATCACCGCAAAAAATTGCTGCCAGAAGATGATACACTTGCCACTAACAAGAACAAGAAATTCAAATTGTTATGA 1314 0.4102 MDAKIDTAEKKLLVDIVKLVQQKGMKGKMGGWKEFLNSHDKKFGASLSDPSKRSHQLLAQFLKTFSTQEDLKFFDNIMRYPSNQRTIERLKDRSHDFPEQSLVQATRQHPRHAKDYSLPSTDKGWLVINIKEKSKGIKSTAMLAVDCEMVLCEDGTEALVEVCVVDHNLEVKLRELVKPEKAIKDYRTEITGVSSKDLETVTRSLADIQKLMKKWLSSGAILVGHSLHNDLRVLKLYYDRVIDTAYIFQPMDGATHRRPSLNSLCQAVLGHEVRKKGASHDCQDDACATMKLVLAKIKHDIDKPFPLTVQELVSESEMSKLLIHRIPTTVTCETLHEIVPGDFTIEEKSTRSGAADKYSALAIFKSQREAHEAYENVQGMQREDSNGLQQKRVTCQLSTGINVCVFVRKMRIDNHRKKLLPEDDTLATNKNKKFKLL 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05010 437 Pfam Exonuclease 144 292 IPR013520 -
Vivi4g05010 437 FunFam Small RNA degrading nuclease 3 137 311 - -
Vivi4g05010 437 CDD REX1_like 143 294 IPR034922 -
Vivi4g05010 437 SUPERFAMILY Ribonuclease H-like 143 299 IPR012337 -
Vivi4g05010 437 Gene3D - 137 311 IPR036397 GO:0003676
Vivi4g05010 437 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 317 IPR047021 GO:0004527
Vivi4g05010 437 SMART exoiiiendus 141 302 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05010 Vivi-Chr4 180434086 180438303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05010 138 309 C2H2 Transcription Factor Family AT3G27970 30.890 5.57e-12 65.1