Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04972 ATGTTCTCCAGCTCCCAATTCGATTCCTCCAACGCCTTCTCCGGCGGCGGATTCACGTCCTCGCAACTCAATGAAACTTCTCCGGCACCGACTAAGAGCCGCGATTCTCAGGGTTTGATTCCGGTTACAGTGAAGCAGATCAGTGAAGCAGATCAATCTGGTGATGAAAAGTCCAATTTCGCAATCAACGGTGTCGATCTCACAAATGTGACCTTGGTTGGAATGGTGTATGAGAAAGCTGAGAGGAACACTGATGTTAATTTTGTTTTGGATGATGGAACTGGGCGGATCAAATGCCGAAGATGGGTTAATGAGTCTTTTGACACAAAGGAAATGGAGGAAGTATTGAATGGCATGTATGTTCGTGTTTATGGGAACTTGAAAAGCTTTCAAGGTGTAAGGCAGCTTGGCGCCTTCTCTGTCAGGCCTGTGACAAATTTTGATGAGATCCCTTTTCACTTCATCGATTGCATACATAACCATCTCCGTACCAAAGTTAAGTTGGAAGGAACCCCTTCTGCATATCCTCCATCAAACACATCTATGAACACTACTGTCAAAAGTGCATTGAATGGATCTCAGGCACAATCCAATCCGGGATATACACAATATAGCACTGATGGACTCAAGGATTGTGATAAATTAGTGATTGACTACCTGCAGCAGCATTCAAGCATGTTAGATGAAAGGGGAATCCATGTTGACGAACTAGCAAGAGAGCTCAAGCTTCCATTGGACAGGATCAAGTTGTCTGTAAAAGCTCTTGAAGATGATGGTCTGGTATACTCCACCATAGATGACTCCCACTACAAACAAGCTTGA 822 0.4416 MFSSSQFDSSNAFSGGGFTSSQLNETSPAPTKSRDSQGLIPVTVKQISEADQSGDEKSNFAINGVDLTNVTLVGMVYEKAERNTDVNFVLDDGTGRIKCRRWVNESFDTKEMEEVLNGMYVRVYGNLKSFQGVRQLGAFSVRPVTNFDEIPFHFIDCIHNHLRTKVKLEGTPSAYPPSNTSMNTTVKSALNGSQAQSNPGYTQYSTDGLKDCDKLVIDYLQQHSSMLDERGIHVDELARELKLPLDRIKLSVKALEDDGLVYSTIDDSHYKQA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04972 273 Pfam OB-fold nucleic acid binding domain 70 136 IPR004365 GO:0003676
Vivi4g04972 273 FunFam Replication protein A 32 kDa subunit 204 273 - -
Vivi4g04972 273 SUPERFAMILY Nucleic acid-binding proteins 39 163 IPR012340 -
Vivi4g04972 273 PIRSF RPA32 1 273 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi4g04972 273 FunFam replication protein A 32 kDa subunit A-like 32 166 - -
Vivi4g04972 273 SUPERFAMILY "Winged helix" DNA-binding domain 207 271 IPR036390 -
Vivi4g04972 273 PANTHER REPLICATION PROTEIN A-RELATED 6 271 IPR040260 -
Vivi4g04972 273 MobiDBLite consensus disorder prediction 1 39 - -
Vivi4g04972 273 CDD RPA2_DBD_D 69 162 - -
Vivi4g04972 273 Gene3D - 203 273 IPR036388 -
Vivi4g04972 273 Pfam Replication protein A C terminal 179 267 IPR014892 -
Vivi4g04972 273 Gene3D - 31 165 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04972 Vivi-Chr4 179991225 179995057 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04972 1 273 Core DNA Replication Machinery Family AT2G24490 48.929 1.63e-89 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04972 K10739 - gmx:100802512 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04972 4 179991225 179995057 Vivi4g04972 4 179991225 179995057 ECH