Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04963 ATGGCTGCATCATTATTGAGAAACCGCTCCACATCGTCGGTGTTCAATTTGTTCACCAATTCTCTTCGTCGATTCTCTTCCGCACAGGCTGCAAACGTCATTCCCGATGAGGCGCGCGAGAGAATGATGTATTCCGACATAAACTCGCAGATTGGAAGCTGTATGCCTCTCTCTGCAATGAGAATCGGAACAATCATTCACAACATTGAGCTGAACCCGGGACAAGGTGGGAAGCTTGTTCGAGCAGCTGGAACCAATGCTAAGATCTTGAAGGAGCCCACATCTGCGTACTGTTTAGTTCAACTTCCGTCTGGTGTGAAAAAGTTGATTGATTCTCGATGCAGGGCCACTGTTGGGACGGTGTCGAATCCGACTCATGGCGATCGTAAGCTTAGGAAGGCTGGACATAGTAGATGGCTTGGGCGGAGACCGGTTGTTCGGGGTGTGGCGATGAATCCGGTTGATCATCCTCATGGTGGAGGAGAGGGGAAGAGTAAGAGTAGTGGTGCGTGGGGGAAAGGATCTCGTACTCCTTGGGGTAAGCCAACTAAGGGGGGTTTCAAGACTGGACCTCTTAAACGCAAAAAGTAG 591 0.5025 MAASLLRNRSTSSVFNLFTNSLRRFSSAQAANVIPDEARERMMYSDINSQIGSCMPLSAMRIGTIIHNIELNPGQGGKLVRAAGTNAKILKEPTSAYCLVQLPSGVKKLIDSRCRATVGTVSNPTHGDRKLRKAGHSRWLGRRPVVRGVAMNPVDHPHGGGEGKSKSSGAWGKGSRTPWGKPTKGGFKTGPLKRKK 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04963 196 MobiDBLite consensus disorder prediction 150 196 - -
Vivi4g04963 196 Pfam Ribosomal Proteins L2, C-terminal domain 50 180 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vivi4g04963 196 FunFam 50S ribosomal protein L2 122 196 - -
Vivi4g04963 196 FunFam 60S ribosomal protein L2, mitochondrial 45 121 - -
Vivi4g04963 196 SMART Ribosomal_L2_C_2 49 182 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vivi4g04963 196 Gene3D Ribosomal protein L2, domain 3 122 196 IPR014726 -
Vivi4g04963 196 ProSitePatterns Ribosomal protein L2 signature. 144 155 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vivi4g04963 196 PANTHER RIBOSOMAL PROTEIN L2 44 193 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vivi4g04963 196 SUPERFAMILY Translation proteins SH3-like domain 51 186 IPR008991 -
Vivi4g04963 196 Gene3D - 45 121 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04963 Vivi-Chr4 179806929 179808152 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04963 48 161 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 44.167 1.03e-23 92.8