Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04958 ATGAGCCGAAAATTTTCCCCCATTAAGGATGTCAACGATTCAAAAGAAACATGGAGATTGGCCGTTCGAGTTGTTGATATTTGGAGTGTTATCAACAGCAAGGGTAAGGAGCATCTGGAGATGGTTATAATGGACGTATCGGGTGATAGGATACAAGTTTTGATTCGTTCTGACCACACACCAAAATGGAAAGCACGAATACGCGAAAACATGTCTTGCATAATCAACAATGGAACTGTTTATGATAACGATTTTCAGTGGAAGCTCTGTGATCATGACAAGAAGTTTGTGTTTATTGGTGGTACAACTGTGAAGGAAGTTGATATTCAGAACCTTCCTCCCAAAAGATTTTTTTTCAAAGACTTTACTGATATTCTCGGAGGCAATTGTGAGATGAACCGATTTGAAGATATCATTGGTGTGGTTCAGGAAATCAACAATTTTCAATATAACAATTCTGGAAAAAAGTCATTTGTTTCATTGAGTTTTAAAGACTTGAAAGGTGTCATAGTTAACTGCACATTATGGGAGAGCTACGAAACAAAATTTTTGGACTTCTACCACGATGAAAAAAACAGTGGTGCTATTGTAATAATACTAACTCATGCAATGATAAAGGAATCACAAGTCTCAAATGGATGGAGTGGATCTAAATTGCTTATTAATGAAGACATTCCAGAGATAACTGAGTATTTATCAAAGTTACCTGCAAATGAGCAGACTGAAAAGCCTTCGCAGTCCTCAAAGGGAATGTCTCTTTGGTCTGGTGCCTCTCAATTCACCCCAGTTGAAAGTTTCGTTCATAAGGCCAAGTGTATATCTCTGAGTGACCTTTGCAAGGTGAAACAGGACATGTTATGCGTTACTGTTGGAACAACTCAAAGGTTTTTTATCTCAAAACACGGTTGGTTTTATTATGGATGTACTAAATGTTCTTTAAAGGCATCTGATGTGAACAATCCATACAAATGTTCATGTGGACAGAATGTAGAACATGCCATACCAAGGTATCGAGTTGACATATATGTAGTTGATGGTGAATCAAAATTTCACTTTGTGTTTTGGGACATTGACTGTGCCGACATTATTGGAAAGTCTGCTGATAGTATTTATAAAGCAATGCTTGAGGAAGGTGACGACGACCCAATGATATATCCAGATGAACTTGACATGCTTCTTGGTAAAAAAATGGCGTTTAGGGCTAAAGTTCAGCCAACATTTGGCCAAGCATCTGTTTGGAAGCTTTCTTATGATGAAGAATTTGTAAAGGAAATTGAGAAAGATTATATTACTGACGAAGGGGATAGCAAATCTTTAAACCAAAACCCAGTCGTTGATCGTGTCGATGAATCCATTGAGTCGTTGTCTGCATACGGAGAAAATGATCCTGATAAAGTTGTGACCAATACTCCATCTAAAGGAAGTCCCGTTAATCTTGATGCTGTAGATTCTGAATTTCAAGCGTATGGTACTACTCAACTTTCAGGAACAAAGCCTGCAAAGAAAGTTAAGATTGAATCTGATGCCTGA 1530 0.3771 MSRKFSPIKDVNDSKETWRLAVRVVDIWSVINSKGKEHLEMVIMDVSGDRIQVLIRSDHTPKWKARIRENMSCIINNGTVYDNDFQWKLCDHDKKFVFIGGTTVKEVDIQNLPPKRFFFKDFTDILGGNCEMNRFEDIIGVVQEINNFQYNNSGKKSFVSLSFKDLKGVIVNCTLWESYETKFLDFYHDEKNSGAIVIILTHAMIKESQVSNGWSGSKLLINEDIPEITEYLSKLPANEQTEKPSQSSKGMSLWSGASQFTPVESFVHKAKCISLSDLCKVKQDMLCVTVGTTQRFFISKHGWFYYGCTKCSLKASDVNNPYKCSCGQNVEHAIPRYRVDIYVVDGESKFHFVFWDIDCADIIGKSADSIYKAMLEEGDDDPMIYPDELDMLLGKKMAFRAKVQPTFGQASVWKLSYDEEFVKEIEKDYITDEGDSKSLNQNPVVDRVDESIESLSAYGENDPDKVVTNTPSKGSPVNLDAVDSEFQAYGTTQLSGTKPAKKVKIESDA 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04958 509 MobiDBLite consensus disorder prediction 463 477 - -
Vivi4g04958 509 SUPERFAMILY Nucleic acid-binding proteins 282 406 IPR012340 -
Vivi4g04958 509 Gene3D - 110 246 IPR012340 -
Vivi4g04958 509 CDD RPA1_DBD_B_like 137 231 - -
Vivi4g04958 509 SUPERFAMILY Nucleic acid-binding proteins 119 241 IPR012340 -
Vivi4g04958 509 MobiDBLite consensus disorder prediction 457 479 - -
Vivi4g04958 509 CDD RPA1_DBD_A_like 19 104 - -
Vivi4g04958 509 MobiDBLite consensus disorder prediction 490 509 - -
Vivi4g04958 509 PANTHER OS03G0429900 PROTEIN 5 476 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi4g04958 509 Gene3D - 266 427 IPR012340 -
Vivi4g04958 509 Pfam Domain of unknown function DUF223 40 125 IPR003871 -
Vivi4g04958 509 SUPERFAMILY Nucleic acid-binding proteins 4 107 IPR012340 -
Vivi4g04958 509 Gene3D - 2 106 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04958 Vivi-Chr4 179747363 179749753 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04958 1 379 Core DNA Replication Machinery Family AT5G08020 22.613 2.20e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04958 - - vvo:131659518 798.505