Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04948 ATGTGGTTACAAAAGAATCAATGGGACAAGAAGGATGGGGTGAATGGAATAGTGGCAGTGGCAATAGATACAGATAAAGGAAGCCAAAATGCACTCAAATGGGCCATTGATCATCTTGTCACAAAAGGTTCAACCATTGTTCTCATTCATGTCAATGTTAAATCACCATCTTCCATTTCAACGCCGAGGTCAGGGATGAGTGAGCAGGTTTTGGTGGTGTGCAAAGATATTGATGAGCATACCAGACATATTTTTAATCCATACCGAGTCTTTTGTGCGCGAAAAGATATACACTGCAAGGACATTGTTCTAGAACATGGAGATGTACCCAAAGCTTTGATTGAATATACTTCTCAAACTGCAGTTGAGCATTTGGTTATAGGCTCATCCAACAAAAATGGTTTTCTCAAAAGATTCAAGGTAGCGGATATTCCAGGAACGGTATCGAAAGGCGCACCCGATTTTTGTACCGTATATGTTGTTTCTAAAGGAAAAATTCAATCCATGAGATCGGCTTCTAGAGCTGCTCCTGCATATTCAGCTCTACAATCTCAGCTTAGTCAATCAAATGCAAGGTCAGATACACCGGATCCTCGACTGCCGATAGCAGCTAAAGCACCCGAGAGGAGGTCATTTGAAGGACAACAACCTCGTAGATCGCAAGATGGAACGACCGATTCGTTCAGGTCGCCGTTTACGAGGAAACGTCCGAATGATAAGTCATATGGAGAACTTCATATGCCAGATAGTGACATATCTTTTGTAAGCTCGGGACGGCCAAGTACCGATCGTTTATTCCCTTCGATATTTAACCAAAACTACAATTCGGAGTCAAGTTTTTCAAATCCTAGGATGTCATATAGTTCTGATACTGATGGAAACTATAGCTTTGAATCATTGAATTATGGAAGGAGATCTGTTGATATTGGCACTCCTGATTTCTCATCCTTCTCGCACGATAGCGATGGATTATCTTCTTCTGCATCGCAAAATGTAGACGATGTGGAAGCTGAAATGAGGAGATTGAAATTGGAGTTAAAGCAAACAATGGAAATGTATAGCACAGCCTGTAAAGAAGCACTCACAGCGCAGCAGAAGGCTGTTGAACTCCAAAGATGGAAATTAGAGGAAGAAAGGAGATTGGAGGAGGCGAGAATGGCTGAAGAAAACGCGTTGGCTGTTGCGGAAAAGGAAAAGGCGATATCCAAAGCAGCGATTGAGGCTGCTGAAGCACAAAAACGAATTGCGGAACTTGAAGCACAAAAGAGAATTAATGCAGAAATGAAAGCTCTAAATGAATCAGAAGAGAAAAGAAAAGTCGTTGATGCTTTGACAAGTAAAGATGTGAGGTACAGAAGGTATGCAATTGAAGAGATCGAAGCTGCGACGAATTTTTTCGCTGATTCTCTTAAGATTGGAGAAGGCGGTTATGGTCCCGTTTATAAATGTCTTCTGGACCATACGCCTGTCGCGGTTAAAGTTCTTCGTCCTGATGCACAACAAGGAAGGTCGCAATTTCAACGAGAAGTTGAGGTATTGAGTTGCATAAGGCATCCAAACATGGTTCTCCTCCTAGGAGCCTGTCCGGAATACGGCTGCCTCGTTTACGAGTTCATGGCGAACGGAAGTTTGGATGACTGTCTCTTTTGTAGAGGAAACACTATACCGCTACCTTGGCAGCTAAGGTTCAAAATTGCAGCTGAAATAGGCACAGGCTTACTCTTCCTCCACCAAACGAAACCCGAGCCATTAGTCCATCGAGACCTCAAACCAGCAAACATCTTACTCGACCGTAACTACGTCTCAAAGATAAGCGACGTTGGTTTAGCAAGACTAGTTCCACCGTCCGTAGCAGACAACGTGACGCAATATAGAATGACGTCGGCTGCGGGAACATTCTGTTACATAGATCCTGAGTACCAACAGACAGGAATGTTGGGAGTGAAATCGGATATATACTCGCTCGGGATAATTTTCTTGCAAATTTTGACGGCTCGGCCACCAATGGGATTGACACATCATGTTGGTAGAGCAATCGAGAAAGGAACATTCGGTGAGATGTTGGATCCAAGAGTGACAGATTGGCCAGTTGAAGAAGCAATGGGATTTGCTAAGTTGGCTATAAAATGTGCTGAGTTAAGGAGAAAAGATAGACCTGATCTTGGTAAAGAGGTTATGCCTGAATTAAATAGATTAAGAGAACTTGCTGAAAATAATGAGCATCATTCATTTTTTAGTGGATTTATAAGTCCTTCTACTCAAAGCCAAGTCTCTCTTCAAATGGATAGTTTAAGTTCTCCACTTCCTTATTCTGGGGAGAGTGCAAAAAATACATCATGTCCTCTTTGA 2349 0.4244 MWLQKNQWDKKDGVNGIVAVAIDTDKGSQNALKWAIDHLVTKGSTIVLIHVNVKSPSSISTPRSGMSEQVLVVCKDIDEHTRHIFNPYRVFCARKDIHCKDIVLEHGDVPKALIEYTSQTAVEHLVIGSSNKNGFLKRFKVADIPGTVSKGAPDFCTVYVVSKGKIQSMRSASRAAPAYSALQSQLSQSNARSDTPDPRLPIAAKAPERRSFEGQQPRRSQDGTTDSFRSPFTRKRPNDKSYGELHMPDSDISFVSSGRPSTDRLFPSIFNQNYNSESSFSNPRMSYSSDTDGNYSFESLNYGRRSVDIGTPDFSSFSHDSDGLSSSASQNVDDVEAEMRRLKLELKQTMEMYSTACKEALTAQQKAVELQRWKLEEERRLEEARMAEENALAVAEKEKAISKAAIEAAEAQKRIAELEAQKRINAEMKALNESEEKRKVVDALTSKDVRYRRYAIEEIEAATNFFADSLKIGEGGYGPVYKCLLDHTPVAVKVLRPDAQQGRSQFQREVEVLSCIRHPNMVLLLGACPEYGCLVYEFMANGSLDDCLFCRGNTIPLPWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADNVTQYRMTSAAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTARPPMGLTHHVGRAIEKGTFGEMLDPRVTDWPVEEAMGFAKLAIKCAELRRKDRPDLGKEVMPELNRLRELAENNEHHSFFSGFISPSTQSQVSLQMDSLSSPLPYSGESAKNTSCPL 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04948 782 MobiDBLite consensus disorder prediction 183 258 - -
Vivi4g04948 782 MobiDBLite consensus disorder prediction 232 246 - -
Vivi4g04948 782 MobiDBLite consensus disorder prediction 760 782 - -
Vivi4g04948 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
Vivi4g04948 782 Pfam Protein kinase domain 469 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04948 782 Gene3D HUPs 17 161 IPR014729 -
Vivi4g04948 782 FunFam U-box domain-containing protein 51 539 739 - -
Vivi4g04948 782 Coils Coil 358 438 - -
Vivi4g04948 782 SUPERFAMILY Protein kinase-like (PK-like) 450 721 IPR011009 -
Vivi4g04948 782 PANTHER OS02G0152300 PROTEIN 18 750 - -
Vivi4g04948 782 MobiDBLite consensus disorder prediction 217 231 - -
Vivi4g04948 782 ProSiteProfiles Protein kinase domain profile. 466 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04948 782 Gene3D Phosphorylase Kinase; domain 1 443 538 - -
Vivi4g04948 782 Gene3D Transferase(Phosphotransferase) domain 1 539 748 - -
Vivi4g04948 782 CDD STKc_IRAK 472 732 - -
Vivi4g04948 782 Coils Coil 325 352 - -
Vivi4g04948 782 SMART serkin_6 466 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04948 782 Pfam Universal stress protein family 18 139 IPR006016 -
Vivi4g04948 782 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 139 - -
Vivi4g04948 782 CDD STK_N 17 164 - -
Vivi4g04948 782 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 438 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04948 Vivi-Chr4 179603145 179607240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04948 1 759 Receptor kinase-like Gene Family AT1G78940 57.069 0.0 814
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vivi4g04948 Pkinase 7.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04948 - - gmx:100779981 1117.83