Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04946 ATGGCTCATAAAAAACCATACTATTGCATTTTCACACTTTTAATGTTGTCCAATTTTTTTGTGCCAATTTTTGGTGACACAAATGGTCAAATTTTGATAAGGTTCAAAAGCTTTTTGTCTAACAACAATGCTTTAAACAATTGGGTTGATGAGTCTAATTTGTGCAATTGGGCTGGTTTGTTATGCACAAACAACAATTTTTATGGATTGAGGTTAGAAAACATGGGACTAGGTGGGAAAATTGATGTAGACACATTATTGGAATTGACAAATTTGGTTAGTTTTAGTGTCATGAATAATTCATTTGAGGGTCCAATGCCTGAATTCAAAAAGCTAGTGAAGTTGAGGGGATTGTTTTTGTCTAATAATAATTTTTCTGGTGAAATTTTAGATAATGGTTTTGAGGGTATGGTGAATCTTAAAAGGGTGTTTTTGGCAGGGAATGAGTTTAATGGTCATATTCCTTTTTCACTTACTTCTTTGACTAGGCTTTTGGATTTGGACTTGCATGGAAATAGTTTTGGAGGTAATATACCTGAATTTCAACAGAATTTTTTCAGATTTTTTGATTTGTCTAACAATCAATTGGAAGGACAAATACCAATAAGCTTAAGCCATGAGCCCTTAACCTCATTTTCTGGCAATAAAGGCCTGTGTGGGAAACCTTTGAATCCATGCAACATTTCTCCAACCAAATCTATTGTTCATCCCAATTCACCATCTTCAATTCAAGGAAATAGAAACAAACTCAAAAAGTTCCTTAGAGTGTTAATCATAGTTCTGGCTCTTGTTGTTTTAGCTTCATTAGTAGCACTTTTGTTAATCCAAAGCCGTGGGAGACGACGAAGCATAAAACAACTCAAACCTATATTAGGGCTACAACAAAATTCTCAAAAGACTCAAAGTTTCAAGGAGACACAATCCATTGATTTAGCTGGTGATTTTAGTAAAGGTGAAAATGGAGAATTGAACTTTGTTAGGGAGGATAGAGGGAGTTTTGATCTGCAAGATCTTCTTAGGGCTTCAGCTGAAGTTCTTGGAAGTGGAAGCTTTGGATCAACTTATAAGGCTATGATTTTGAATGGACCAATTGTTGTTGTGAAGAGATTTAGGCACATGAACAATGTTGGGAAGAATGAGTTTTTTGAACACATGAAAAAGCTTGGAAGTTTGAATCATCCTAATCTACTCCCTCTTGTGGCATTCTACTACAAGAAAGAAGAAAAGTTTTTGGTTTATGATTTTGGTGAAAATGGTAGCTTGGCTAGTCATCTACACGGTAGAAACGGAGTCGTACTTAACTGGCCGACTCGTCTAAGAATCATAAAAGGAGTAGCAAGAGGTTTATCACATCTCTACAAAGAATTTCCAAAACAAAACCTACCACATGGTCATCTAAAATCTTCCAATGTAATCCTAAACAATTCATTTGAGCCACTTTTAACAGAATATGGACTTATACCTATGACAAACAAAAACCATGCACAACAATTCATGGCATCCTACAAATCACCAGAAGTCACACATTTCGATAGACCAAACGAAAAAACCGACATTTGGTGTCTCGGAATCCTCATATTAGAGCTATTGACAGGAAAGTTTCCGTCGAATTATCTTCGACATGGGAAAGGCGGAGAGAGTTCGGATTTAGCAACATGGGTGAACTCAGTAGTGAGAGAAGAATGGACAGGTGAAGTGTTTGATAAGGATATAATGGGAACAAGGAATGGTGAAGGTGAGATGTTGAAGCTTTTGAGGATTGGAATGTTTTGTTGTGAATGGAGTGTGGAGAGGAGATTGGATTGGAAAAGTGCTTTGGCTAAGATTGAAGAGCTTAAGGAGAAAGACAGTGAAGATGAATCTTTTTCTTATGTTAGTGAAGGTGATTTGTATTCAAGAGGTGTGACTGATGATGATTTCTCTTTTTCTGTTGTTACTGATTCACATGTTGATAAGATTGGGAATGTGACAGAGTAG 1977 0.3622 MAHKKPYYCIFTLLMLSNFFVPIFGDTNGQILIRFKSFLSNNNALNNWVDESNLCNWAGLLCTNNNFYGLRLENMGLGGKIDVDTLLELTNLVSFSVMNNSFEGPMPEFKKLVKLRGLFLSNNNFSGEILDNGFEGMVNLKRVFLAGNEFNGHIPFSLTSLTRLLDLDLHGNSFGGNIPEFQQNFFRFFDLSNNQLEGQIPISLSHEPLTSFSGNKGLCGKPLNPCNISPTKSIVHPNSPSSIQGNRNKLKKFLRVLIIVLALVVLASLVALLLIQSRGRRRSIKQLKPILGLQQNSQKTQSFKETQSIDLAGDFSKGENGELNFVREDRGSFDLQDLLRASAEVLGSGSFGSTYKAMILNGPIVVVKRFRHMNNVGKNEFFEHMKKLGSLNHPNLLPLVAFYYKKEEKFLVYDFGENGSLASHLHGRNGVVLNWPTRLRIIKGVARGLSHLYKEFPKQNLPHGHLKSSNVILNNSFEPLLTEYGLIPMTNKNHAQQFMASYKSPEVTHFDRPNEKTDIWCLGILILELLTGKFPSNYLRHGKGGESSDLATWVNSVVREEWTGEVFDKDIMGTRNGEGEMLKLLRIGMFCCEWSVERRLDWKSALAKIEELKEKDSEDESFSYVSEGDLYSRGVTDDDFSFSVVTDSHVDKIGNVTE 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04946 658 SUPERFAMILY L domain-like 43 223 - -
Vivi4g04946 658 Gene3D Phosphorylase Kinase; domain 1 291 415 - -
Vivi4g04946 658 Pfam Leucine rich repeat N-terminal domain 29 62 IPR013210 -
Vivi4g04946 658 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Vivi4g04946 658 Gene3D Transferase(Phosphotransferase) domain 1 417 632 - -
Vivi4g04946 658 Gene3D Ribonuclease Inhibitor 133 230 IPR032675 -
Vivi4g04946 658 ProSiteProfiles Protein kinase domain profile. 340 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04946 658 FunFam pollen receptor-like kinase 1 311 415 - -
Vivi4g04946 658 Pfam Protein kinase domain 343 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04946 658 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 618 IPR046959 -
Vivi4g04946 658 Gene3D Ribonuclease Inhibitor 27 132 IPR032675 -
Vivi4g04946 658 SUPERFAMILY Protein kinase-like (PK-like) 344 612 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04946 Vivi-Chr4 179593006 179595566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04946 1 642 Receptor kinase-like Gene Family AT4G31250 43.290 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi4g04946 Pkinase 2.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04946 - - tpra:123893577 1049.27