Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04936 ATGGATCAAAAGAAATCTAACAAAATAAGAGAAATTGTTAGACTTCAACAGATCCTTAAGAAATGGAGAAGAATAGCAAACTCATCCAAAACCACAACCACAACCACAACAACAACCTTAAACCACAGCCTCACTAGAAGCAAAAGCATGAAGTTTTTGAAAAGAACACTTTCCTTATCAGAACGCGAAGTAACAACAACAATAACATCCTCAAACAATGGTTCTGTTCCAAAAGGCTATTTAGCGGTTTGTGTTGGAGAAGAGCTCAAGAGGTTTATCATACCAACTGAATATTTGAGTCATCAATGTTTCATGATACTTTTGAGAGAAGCTGAGGAAGAATTTGGGTTTCAACAAATTGGTGTTTTGAGATTTCCTTGTGAAGTTTCGGTTTTTGAGAGTGTTTTGAAGATGGTTCAAGAATGTAGATCAATTAGCATTGAAGAAATGATGGGTTATTGTTCTTTGGAAAATCAACTTGCTTGTTCTCATCATCCTCAAAGTCCATTGTGTAGATAG 519 0.3545 MDQKKSNKIREIVRLQQILKKWRRIANSSKTTTTTTTTTLNHSLTRSKSMKFLKRTLSLSEREVTTTITSSNNGSVPKGYLAVCVGEELKRFIIPTEYLSHQCFMILLREAEEEFGFQQIGVLRFPCEVSVFESVLKMVQECRSISIEEMMGYCSLENQLACSHHPQSPLCR 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04936 172 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 54 135 IPR003676 GO:0009733
Vivi4g04936 172 Pfam Auxin responsive protein 49 139 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04936 Vivi-Chr4 179501422 179502213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04936 1 172 Calmodulin-binding Proteins AT4G31320 48.000 1.39e-53 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04936 K14488 - psat:127092634 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g04936 4 179501422 179502213 Vivi4g04936 4 179501422 179502213 ECH
Vivi4g04936 4 179501422 179502213 Vivi4g04936 4 179501422 179502213 PCT