Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04928 ATGCCTCGTGGAACTCTAGAAGTGATTCTCATTGGAGCAAAAGGCCTTCATGACACTGATTTTTTCACAGAGAAAATGGATCCCTATGTGATTCTGACTTATAAAGCTCAGGAGCACATAAGCAGTGTAGCCAAAAATGCAGGATCTAATCCTCGTTGGAATGAAAGCTTTCTTTTCACTGTTGCTGACAATGTTGCTGAACTTAATTTGAGGCTTATGGATAAAGATAAATTTACCAGAGATGATTTTCTTGGTGAAACAATAATTAATTTGGGACCAGTTCTTGAGGAATATAGTGTGCCAGAAACTTCTTATAATGTTGTGAAAAATCAGAATTACCGTGGAGAAGTTCGTTTGGCTCTCACTTTTCATCCAGAGGGTGGGTTTTACTGA 393 0.3817 MPRGTLEVILIGAKGLHDTDFFTEKMDPYVILTYKAQEHISSVAKNAGSNPRWNESFLFTVADNVAELNLRLMDKDKFTRDDFLGETIINLGPVLEEYSVPETSYNVVKNQNYRGEVRLALTFHPEGGFY 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04928 130 SMART C2_3c 5 103 IPR000008 -
Vivi4g04928 130 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 127 IPR035892 -
Vivi4g04928 130 Gene3D C2 domain 2 126 IPR035892 -
Vivi4g04928 130 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Vivi4g04928 130 Pfam C2 domain 4 104 IPR000008 -
Vivi4g04928 130 PANTHER C2 DOMAIN-CONTAINING 1 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04928 Vivi-Chr4 179319241 179320319 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04928 4 95 C2H2 Transcription Factor Family AT4G21160 33.696 1.14e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04928 - - gmx:100814819 184.111