Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04927 ATGCCTCGTGGAACTCTAGAAGTGATTCTCATTGGAGCAAAAGGCCTTCATGACACTGATTTTTTCAAGAAAATGGATCCCTATGTGATTCTGACTTATAAAGCTCAGGAGCACATAAGCAGTGTAGCCAAAAATGCAGGATCTAATCCTCGTTGGAATGAAAGCTTTCTTTTCACTGTTGCTGACAATGTTGCTGAACTTAATTTGAGGCTTATGGATAAAGATAAATTTACCAGAGATGATTTTCTTGGTGAAACAATAATTAATTTGGGACCAGTTCTTGAGGAATATAGTGTGCCAGAAACTTCTTATAATGTTGTGAAAAATCAGAATTACCGTGGAGAAGTTCGTTTGGCTCTCACTTTTCATCCAGAGGGTGGGTTTTACTGA 390 0.3795 MPRGTLEVILIGAKGLHDTDFFKKMDPYVILTYKAQEHISSVAKNAGSNPRWNESFLFTVADNVAELNLRLMDKDKFTRDDFLGETIINLGPVLEEYSVPETSYNVVKNQNYRGEVRLALTFHPEGGFY 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04927 129 Gene3D C2 domain 2 125 IPR035892 -
Vivi4g04927 129 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Vivi4g04927 129 Pfam C2 domain 4 103 IPR000008 -
Vivi4g04927 129 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 126 IPR035892 -
Vivi4g04927 129 PANTHER C2 DOMAIN-CONTAINING 1 123 - -
Vivi4g04927 129 SMART C2_3c 5 102 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04927 Vivi-Chr4 179319239 179320319 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04927 4 94 C2H2 Transcription Factor Family AT4G21160 34.066 1.45e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04927 - - gmx:100814819 188.734