Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04922 ATGGTGGAGAAGACCGGCGCCGGTAGGAAGGAAGAGGTGGTTACCAAAGAGTACACCATTAACCTCCATAAACGCCTCCATGAATGCACATTTAAGAAGAAAGCTCCAAAAGCCATCAAGGAGATAAGGAAGTTTGCCCAAAAAGCAATGGGAACCAATGATGTTCGTTTTGACGACAAAAATGATGACGAGGATGCGAAGGAAGAGCTCTACTCTCTTGTTACTGTTGTTGAAATCCCCAAGGAATAG 249 0.4458 MVEKTGAGRKEEVVTKEYTINLHKRLHECTFKKKAPKAIKEIRKFAQKAMGTNDVRFDDKNDDEDAKEELYSLVTVVEIPKE 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04922 82 SMART Ribosomal_L31e_2 11 69 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vivi4g04922 82 PANTHER 60S RIBOSOMAL PROTEIN L31 3 59 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vivi4g04922 82 Pfam Ribosomal protein L31e 12 60 IPR000054 GO:0003735|GO:0005840|GO:0006412
Vivi4g04922 82 SUPERFAMILY Ribosomal protein L31e 12 60 IPR023621 -
Vivi4g04922 82 Gene3D - 2 60 IPR023621 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04922 Vivi-Chr4 179212256 179213110 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04922 6 82 Cytoplasmic Ribosomal Protein Gene Family AT2G19740 62.745 6.15e-37 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04922 K02910 - gmx:100306335 130.183