Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04921 ATGCAAAAGGACAGAGAAGCTGTTAGCAAAGGAAAAGATATGGAAACAGAAGGAAATGGTGTGAAAGAGGAAACCCTACCTCCGGGATTTCGGTTTCATCCTACCGATGAAGAACTCATCACTTACTATCTTGTGAACAAGATATCAGATTCTGATCAGTTTACTTGCAAAGCTATAGGTGATGTAGATCTCAACAAATGCGAACCATGGGAGCTTCCAGGGAAGGCAAAGATGGGTACAAAAGAATGGTACTTCTTCAGTTTACGAGATCGAAAATATCCAACTGGTGTGAGAACTAATAGAGCAACAAACACTGGATATTGGAAAACCACTGGGAAAGACAAGGAAATATTCAACAGTGTTACATCAGAGTTGGTTGGTATGAAGAAGACTTTGGTTTTTTACAAAGGTAGGGCTCCTAGAGGAGAGAAATCAAATTGGGTCATGCATGAATATCGTATTCATTCCAAATCAACCTTCCGAACCAACAAGGATGAGTGGGTGGTGAGCAGGGTATTCCGGAAGAGTGCAGGTGTAAAGAAGTACTACCCTTCTTTAAACCCTACAAGAGCAGTGATGAATAATCCTTACAATATTAATCTAGAAGTTGGTCCTAACAACATGAACATGCCACCACCATCAATGATGCAGCTAGGGCTAGATTCTTCTTCTGCTGCTACTCATAATTTCCATCTCTATGGAAGAAACTACATCAACACTCCGGATCAGGTAGCTGAAGTCACTAGGCTTCTAAGAGCTGGTGTTGTGCCAATGCATCAATATTCTCATTTGAACTTTCCAGTATCATCGTCATCATCGCCCCTAGATGGTGGAGGATTCACCATTTCAGGACTTAATTTGAATCTTGGAGGTGCAACTTCATCACATTCACAACCTATTTTTAGGCCAATGCCATCAACTACTACTACTAATGCTCATATGGCTGCTCATCAACTGCATGATTTCAGCTCCAACATGATTTGTAATAATAGTAATATCAATAATGTTGGATATGATGGTGGAGAACAAGTGAATAATCCAAATACTAATGGTCATGGAAATAGTAATAGGTACAATAATATGCAGGGTACTATGGACCATTGTGTGGATCTTGATAATTATTGGCCACCTTCTTACTAA 1140 0.3982 MQKDREAVSKGKDMETEGNGVKEETLPPGFRFHPTDEELITYYLVNKISDSDQFTCKAIGDVDLNKCEPWELPGKAKMGTKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRTNKDEWVVSRVFRKSAGVKKYYPSLNPTRAVMNNPYNINLEVGPNNMNMPPPSMMQLGLDSSSAATHNFHLYGRNYINTPDQVAEVTRLLRAGVVPMHQYSHLNFPVSSSSSPLDGGGFTISGLNLNLGGATSSHSQPIFRPMPSTTTTNAHMAAHQLHDFSSNMICNNSNINNVGYDGGEQVNNPNTNGHGNSNRYNNMQGTMDHCVDLDNYWPPSY 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04921 379 Gene3D NAC domain 35 179 IPR036093 GO:0003677|GO:0006355
Vivi4g04921 379 MobiDBLite consensus disorder prediction 1 20 - -
Vivi4g04921 379 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 23 306 - -
Vivi4g04921 379 MobiDBLite consensus disorder prediction 1 29 - -
Vivi4g04921 379 Pfam No apical meristem (NAM) protein 27 154 IPR003441 GO:0003677|GO:0006355
Vivi4g04921 379 ProSiteProfiles NAC domain profile. 26 175 IPR003441 GO:0003677|GO:0006355
Vivi4g04921 379 FunFam NAC domain-containing protein 100-like 35 179 - -
Vivi4g04921 379 SUPERFAMILY NAC domain 21 175 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04921 Vivi-Chr4 179196374 179198472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04921 22 376 NAC Transcription Factor Family AT2G24430 49.727 3.53e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi4g04921 NAM 4.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04921 - - gmx:100811175 446.047