Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04920 ATGCAAAAGGACAGAGAAGCTGTTAGCAAAGGAAAAGATATGGAAACAGAAGGAAATGGTGTGAAAGAGGAAACCCTACCTCCGGGATTTCGGTTTCATCCTACCGATGAAGAACTCATCACTTACTATCTTGTGAACAAGATATCAGATTCTGATCAGTTTACTTGCAAAGCTATAGGTGATGTAGATCTCAACAAATGCGAACCATGGGAGCTTCCAGGGAAGGCAAAGATGGGTACAAAAGAATGGTACTTCTTCAGTTTACGAGATCGAAAATATCCAACTGGTGTGAGAACTAATAGAGCAACAAACACTGGATATTGGAAAACCACTGGGAAAGACAAGGAAATATTCAACAGTGTTACATCAGAGTTGGTTGGTATGAAGAAGACTTTGGTTTTTTACAAAGGTAGGGCTCCTAGAGGAGAGAAATCAAATTGGGTCATGCATGAATATCGTATTCATTCCAAATCAACCTTCCGAACCAACAAGCAGGATGAGTGGGTGGTGAGCAGGGTATTCCGGAAGAGTGCAGGTGTAAAGAAGTACTACCCTTCTTTAAACCCTACAAGAGCAGTGATGAATAATCCTTACAATATTAATCTAGAAGTTGGTCCTAACAACATGAACATGCCACCACCATCAATGATGCAGCTAGGGCTAGATTCTTCTTCTGCTGCTACTCATAATTTCCATCTCTATGGAAGAAACTACATCAACACTCCGGATCAGGTAGCTGAAGTCACTAGGCTTCTAAGAGCTGGTGTTGTGCCAATGCATCAATATTCTCATTTGAACTTTCCAGTATCATCGTCATCATCGCCCCTAGATGGTGGAGGATTCACCATTTCAGGACTTAATTTGAATCTTGGAGGTGCAACTTCATCACATTCACAACCTATTTTTAGGCCAATGCCATCAACTACTACTACTAATGCTCATATGGCTGCTCATCAACTGCATGATTTCAGCTCCAACATGATTTGTAATAATAGTAATATCAATAATGTTGGATATGATGGTGGAGAACAAGTGAATAATCCAAATACTAATGGTCATGGAAATAGTAATAGGTACAATAATATGCAGGGTACTATGGACCATTGTGTGGATCTTGATAATTATTGGCCACCTTCTTACTAA 1143 0.399 MQKDREAVSKGKDMETEGNGVKEETLPPGFRFHPTDEELITYYLVNKISDSDQFTCKAIGDVDLNKCEPWELPGKAKMGTKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRTNKQDEWVVSRVFRKSAGVKKYYPSLNPTRAVMNNPYNINLEVGPNNMNMPPPSMMQLGLDSSSAATHNFHLYGRNYINTPDQVAEVTRLLRAGVVPMHQYSHLNFPVSSSSSPLDGGGFTISGLNLNLGGATSSHSQPIFRPMPSTTTTNAHMAAHQLHDFSSNMICNNSNINNVGYDGGEQVNNPNTNGHGNSNRYNNMQGTMDHCVDLDNYWPPSY 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04920 380 Pfam No apical meristem (NAM) protein 27 154 IPR003441 GO:0003677|GO:0006355
Vivi4g04920 380 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 23 307 - -
Vivi4g04920 380 MobiDBLite consensus disorder prediction 1 20 - -
Vivi4g04920 380 SUPERFAMILY NAC domain 21 176 IPR036093 GO:0003677|GO:0006355
Vivi4g04920 380 Gene3D NAC domain 35 180 IPR036093 GO:0003677|GO:0006355
Vivi4g04920 380 ProSiteProfiles NAC domain profile. 26 176 IPR003441 GO:0003677|GO:0006355
Vivi4g04920 380 MobiDBLite consensus disorder prediction 1 29 - -
Vivi4g04920 380 FunFam NAC domain-containing protein 100-like 35 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04920 Vivi-Chr4 179196374 179198472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04920 22 377 NAC Transcription Factor Family AT2G24430 50.000 6.17e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi4g04920 NAM 4.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04920 - - gmx:100811175 452.595