Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04880 ATGATAATTAAGAAGAATCTCAAATCCGAAATGCCGACTCGGAAACGGGGTAGACTCGGTAACTCGGAGGAGAACGAGTCGTCAAGGTTGACTCAGAGAAACAAAAAGAAGAAATTTAATGGGAATTTTCCGATGAATCTCCTCGCCGGTGCAATTCCCGCTAGTTTTACTGGATTACTCGGTGCAACGGTTGCAACCACCGTGGCAACGTCGGATAACGGGTTTGATTTGTCTAATGGGAAACCGGATGTTAAGAATGCGGCGAACCGGCCGCCGTTGGTTCGGACTTCCCGCGGCCGGCTTCAGGTTTTGCCATCGAGGTTTAATGATTCTGTTATTGTGAATTGGAGGAAGGAAGGAAGGAACAACAGTAACAACGCAGCGGCGGCTGATACGAGCTTTCGGGAATTTGAATTTGATGAATTTGGTTTCAAAAATTATGGTGGAAAGGGGAAGAATGGGAATGGGAATGGGAATGGGATGGCAGGGAGCCGAAACAGGCCTCGCGGGTATTCGGTTTTGTGTGAGGAGGTTTTGCATAAGAATTTCGGTGTTGCTGCAGGCAAAGAATTGAGTTTGCGTGAGATTTTTGAAGAAACGAAAATAAATAATGAAGTTTTGAAGAAGGAGGAGGAGAAGAAAGAGGGGTTGTTTGGACCAGAAGATTTTTATGCAGGTGATATAGTGTGGGCTAAGGCGAAGAAAAAGGAACCTTTTTGGCCTGCAATTGTCATTGATCCAATTCATCAAGCACCTGAGCTGGTATTGAGATCATGTATAGCTGATGCTGCTTGTGTCATGTTTCTTGGCTACTCTGGGAATGAAAATCACAGGGATTTTGCATGGGTGAAGTATGGAATGATATTTCCATTTGTGGATTATGCAGACAGGTTTCAAGAGCAATCTGAATTGAGTTTCTGTAATTCCTCTCAATTTCAAGTTGCGATTGAGGAAGCCTTTTTGGCTGATCAGGGGTTTGTAGAGAACTTGAATGAAGATTTGAGTGCAGTGGCTGGTAATAATGGTTGTAGTAATAGTTCTATTCTTAAAGTCTTTCAGAATGTAGCTGCTTCAAACAAGAACGAGGGTGGTCCTGTTCAGAAGAAAAATTTATTTGAAAGAGAGAAAAATGCGCGACTTTGTGCAGAATGTGGATTGGACGTTCCTCTCAATATGTCGAGGAAAAAAAAGGATTTGACTCCTAGTGGTCAACTCCTATGCAAAACATGTGCCAGGTTAACAAAATCAAAACATTATTGCGGCATATGTAAGAAAGTTTGGAATCAATCAGATAGTGGGAGCTGGGTCCGTTGTGATGGATGTAAAGTGTGGGTGCATGCTGAATGCGACAAAATCTCCAGCATTCTTTTCAAGAATCTTGGAAGCACAGATTATTTCTGCCCTGCTTGCAAAGTGAAGTTTAATTTTGAATTATCGGATTCAGAAAAATCAAATCCAAAAGTCAAATGGAACAAAAAGAATGGGCAGCTAGGACTTCCAAAAAAGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCATTCACTTAGTTATGTGCAAGTGTGGTTTTTGTGATACTGAAAAGCAAGCACTTAGTGAATGGGAACGCCACACAGGTTCCAAATTTAGAAACTGGAGAACAAGTATTCGCATTAAAGGATCCATGATATCGCTGGAACAATGGATGCTGCAGTTGGCTGAATTTCATGCTAAAGCTGTAGTTTATGTCAAACCTAAAAGACCATCCACAAAAGAAAGAAAACAGAAATTGCTTAACTTTCTGCAAGACAAGTACGAACCTGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGACTACAACAAAATTATCATCTGCGTCAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCAGACATCACACGAGAGTGTTGTCTTTGTCCTGTTAAAGGTGGTGCTCTAAAGCCTACTGATGTTGATCCATTATGGGTTCACGTCACTTGTGCCTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAGAAAATGGAGCCTGCTTTGGGTATCTTAAGTATTCCATCAAACTCTTTCGTGAAGATTTGTGTTATTTGTAAGCAAATCCATGGCTCGTGCACACAATGTTGCAAGTGTTCCACTTATTTTCATGCCATGTGTGCATCAAGGGCCGGTTATCGCATGGAGTTGCATTGTTCAGAGAAAAATGGTAAACAGACAACAAGAATGGTTTCTTATTGTGCTTATCACAGGGCTCCCAATCCAGACACTGTTTTGATCATACACACTCCTCAAGGGGTCATTTCAACTAAAATCCTTATCCAAAAAAAGAGAAAAGTCGGGTCAAGATTAATTTCATCGAACCGAATAAAGGAAGAAGACACTCCTCTACCAGATAACACCGAACATGATCCATTTTCTGCTGCTAGGTGCCGAATCTTTGTAAGAATAAACCGCACAAAAAAGAGAGCAGCCGATGAAGCCGTTCCTCATAAAGTGAGGGGTCACTGCCGTCATCCTCTAGATGCAATTCAGAGATTAAATCCATGCAAAGTGGTAGACGAGTCTCGGACATTTTCATCATTTAAGGAACGCCTTCATCACCTACAGAGAACCGAAAATGAACGAGTGTGCTTCGGTAGATCAGGCATACATGGATGGGGCTTGTTTGCACGAAGAGTTATTCAAGAAGGAGAAATGGTCCTTGAATATCGTGGCGAACAAGTAAGGCGCAGCGTTGCAGACCTGAGGGAGGCACGCTACAAATTAGAAAGGAAAGACTGCTATCTTTTCAAAATAAGTGAAGAAGTGGTAGTTGATGCAACCGATAAGGGAAATATAGCGCGGTTAATTAACCATTCTTGTATGCCAAATTGCTATGCAAGAATCATGTCTGTGGGTCATGACGAGAGCCGGATCGCACTCATTGCCAAGACTAAAGTATCTGCCGGTGACGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTTAAAGTTCCATGTTTATGTAAAGCTCCAAACTGCAGGAAATTCATGAACTAG 3141 0.4193 MIIKKNLKSEMPTRKRGRLGNSEENESSRLTQRNKKKKFNGNFPMNLLAGAIPASFTGLLGATVATTVATSDNGFDLSNGKPDVKNAANRPPLVRTSRGRLQVLPSRFNDSVIVNWRKEGRNNSNNAAAADTSFREFEFDEFGFKNYGGKGKNGNGNGNGMAGSRNRPRGYSVLCEEVLHKNFGVAAGKELSLREIFEETKINNEVLKKEEEKKEGLFGPEDFYAGDIVWAKAKKKEPFWPAIVIDPIHQAPELVLRSCIADAACVMFLGYSGNENHRDFAWVKYGMIFPFVDYADRFQEQSELSFCNSSQFQVAIEEAFLADQGFVENLNEDLSAVAGNNGCSNSSILKVFQNVAASNKNEGGPVQKKNLFEREKNARLCAECGLDVPLNMSRKKKDLTPSGQLLCKTCARLTKSKHYCGICKKVWNQSDSGSWVRCDGCKVWVHAECDKISSILFKNLGSTDYFCPACKVKFNFELSDSEKSNPKVKWNKKNGQLGLPKKVTVLCNGVEGIYFPSIHLVMCKCGFCDTEKQALSEWERHTGSKFRNWRTSIRIKGSMISLEQWMLQLAEFHAKAVVYVKPKRPSTKERKQKLLNFLQDKYEPVCAKWTTERCAVCRWVEDWDYNKIIICVRCQIAVHQECYGARNVRDFTSWVCKACETPDITRECCLCPVKGGALKPTDVDPLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCSEKNGKQTTRMVSYCAYHRAPNPDTVLIIHTPQGVISTKILIQKKRKVGSRLISSNRIKEEDTPLPDNTEHDPFSAARCRIFVRINRTKKRAADEAVPHKVRGHCRHPLDAIQRLNPCKVVDESRTFSSFKERLHHLQRTENERVCFGRSGIHGWGLFARRVIQEGEMVLEYRGEQVRRSVADLREARYKLERKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGHDESRIALIAKTKVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04880 1046 SUPERFAMILY FYVE/PHD zinc finger 417 475 IPR011011 -
Vivi4g04880 1046 Pfam PWWP domain 226 319 IPR000313 -
Vivi4g04880 1046 ProSiteProfiles SET domain profile. 904 1021 IPR001214 GO:0005515
Vivi4g04880 1046 SUPERFAMILY FYVE/PHD zinc finger 612 676 IPR011011 -
Vivi4g04880 1046 Gene3D - 220 325 - -
Vivi4g04880 1046 ProSitePatterns Zinc finger PHD-type signature. 614 659 IPR019786 -
Vivi4g04880 1046 ProSiteProfiles Zinc finger PHD-type profile. 417 473 IPR019787 -
Vivi4g04880 1046 CDD SET_SETD1-like 893 1042 - -
Vivi4g04880 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 782 IPR013083 -
Vivi4g04880 1046 MobiDBLite consensus disorder prediction 1 33 - -
Vivi4g04880 1046 MobiDBLite consensus disorder prediction 1 38 - -
Vivi4g04880 1046 ProSiteProfiles Extended PHD (ePHD) domain profile. 665 780 IPR034732 -
Vivi4g04880 1046 SMART PostSET_3 1030 1046 IPR003616 -
Vivi4g04880 1046 FunFam Histone-lysine N-methyltransferase 663 782 - -
Vivi4g04880 1046 CDD PWWP_AtATX3-like 224 326 - -
Vivi4g04880 1046 CDD PHD_ATX3_4_5_like 613 659 IPR042011 -
Vivi4g04880 1046 Pfam PHD-finger 419 472 IPR019787 -
Vivi4g04880 1046 Gene3D SET domain 799 1046 IPR046341 -
Vivi4g04880 1046 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 1046 IPR025780 -
Vivi4g04880 1046 ProSiteProfiles PWWP domain profile. 225 294 IPR000313 -
Vivi4g04880 1046 SMART set_7 904 1027 IPR001214 GO:0005515
Vivi4g04880 1046 SUPERFAMILY Tudor/PWWP/MBT 218 322 - -
Vivi4g04880 1046 Pfam SET domain 915 1020 IPR001214 GO:0005515
Vivi4g04880 1046 Pfam PHD-finger 626 660 - -
Vivi4g04880 1046 ProSiteProfiles Post-SET domain profile. 1030 1046 IPR003616 -
Vivi4g04880 1046 FunFam Histone-lysine N-methyltransferase 879 1046 - -
Vivi4g04880 1046 SUPERFAMILY SET domain 896 1043 IPR046341 -
Vivi4g04880 1046 ProSiteProfiles Zinc finger PHD-type profile. 611 662 IPR019787 -
Vivi4g04880 1046 Pfam PHD-zinc-finger like domain 667 779 - -
Vivi4g04880 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 414 474 IPR013083 -
Vivi4g04880 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 662 IPR013083 -
Vivi4g04880 1046 PANTHER PHD FINGER PROTEINS 37 495 - -
Vivi4g04880 1046 CDD ePHD_ATX3_4_5_like 668 779 IPR041955 -
Vivi4g04880 1046 CDD PHD_TCF19_like 420 470 - -
Vivi4g04880 1046 SMART PHD_3 613 660 IPR001965 -
Vivi4g04880 1046 SMART PHD_3 419 471 IPR001965 -
Vivi4g04880 1046 SMART PHD_3 724 780 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04880 Vivi-Chr4 178524161 178533115 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04880 614 779 C2H2 Transcription Factor Family AT3G14740 34.286 7.11e-19 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi4g04880 zf-HC5HC2H_2 5e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04880 - - gmx:100808761 1528.84