Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04879 ATGATAATTAAGAAGAATCTCAAATCCGAAATGCCGACTCGGAAACGGGGTAGACTCGGTAACTCGGAGGAGAACGAGTCGTCAAGGTTGACTCAGAGAAACAAAAAGAAGAAATTTAATGGGAATTTTCCGATGAATCTCCTCGCCGGTGCAATTCCCGCTAGTTTTACTGGATTACTCGGTGCAACGGTTGCAACCACCGTGGCAACGTCGGATAACGGGTTTGATTTGTCTAATGGGAAACCGGATGTTAAGAATGCGGCGAACCGGCCGCCGTTGGTTCGGACTTCCCGCGGCCGGCTTCAGGTTTTGCCATCGAGGTTTAATGATTCTGTTATTGTGAATTGGAGGAAGGAAGGAAGGAACAACAGTAACAACGCAGCGGCGGCTGATACGAGCTTTCGGGAATTTGAATTTGATGAATTTGGTTTCAAAAATTATGGTGGAAAGGGGAAGAATGGGAATGGGAATGGGAATGGGATGGCAGGGAGCCGAAACAGGCCTCGCGGGTATTCGGTTTTGTGTGAGGAGGTTTTGCATAAGAATTTCGGTGTTGCTGCAGGCAAAGAATTGAGTTTGCGTGAGATTTTTGAAGAAACGAAAATAAATAATGAAGTTTTGAAGAAGGAGGAGGAGAAGAAAGAGGGGTTGTTTGGACCAGAAGATTTTTATGCAGGTGATATAGTGTGGGCTAAGGCGAAGAAAAAGGAACCTTTTTGGCCTGCAATTGTCATTGATCCAATTCATCAAGCACCTGAGCTGGTATTGAGATCATGTATAGCTGATGCTGCTTGTGTCATGTTTCTTGGCTACTCTGGGAATGAAAATCACAGGGATTTTGCATGGGTGAAGTATGGAATGATATTTCCATTTGTGGATTATGCAGACAGGTTTCAAGAGCAATCTGAATTGAGTTTCTGTAATTCCTCTCAATTTCAAGTTGCGATTGAGGAAGCCTTTTTGGCTGATCAGGGGTTTGTAGAGAACTTGAATGAAGATTTGAGTGCAGTGGCTGGTAATAATGGTTGTAGTAATAGTTCTATTCTTAAAGTCTTTCAGAATGTAGCTGCTTCAAACAAGAACGAGGGTGGTCCTGTTCAGAAGAAAAATTTATTTGAAAGAGAGAAAAATGCGCGACTTTGTGCAGAATGTGGATTGGACGTTCCTCTCAATATGTCGAGGAAAAAAAAGGATTTGACTCCTAGTGGTCAACTCCTATGCAAAACATGTGCCAGGTTAACAAAATCAAAACATTATTGCGGCATATGTAAGAAAGTTTGGAATCAATCAGATAGTGGGAGCTGGGTCCGTTGTGATGGATGTAAAGTGTGGGTGCATGCTGAATGCGACAAAATCTCCAGCATTCTTTTCAAGAATCTTGGAAGCACAGATTATTTCTGCCCTGCTTGCAAAGTGAAGTTTAATTTTGAATTATCGGATTCAGAAAAATCAAATCCAAAAGTCAAATGGAACAAAAAGAATGGGCAGCTAGGACTTCCAAAAAAGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCATTCACTTAGTTATGTGCAAGTGTGGTTTTTGTGATACTGAAAAGCAAGCACTTAGTGAATGGGAACGCCACACAGGTTCCAAATTTAGAAACTGGAGAACAAGTATTCGCATTAAAGGATCCATGATATCGCTGGAACAATGGATGCTGCAGTTGGCTGAATTTCATGCTAAAGCTGTAGTTTATGTCAAACCTAAAAGACCATCCACAAAAGAAAGAAAACAGAAATTGCTTAACTTTCTGCAAGACAAGTACGAACCTGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGACTACAACAAAATTATCATCTGCGTCAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCAGACATCACACGAGAGTGTTGTCTTTGTCCTGTTAAAGGTGGTGCTCTAAAGCCTACTGATGTTGATCCATTATGGGTTCACGTCACTTGTGCCTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAGAAAATGGAGCCTGCTTTGGGTATCTTAAGTATTCCATCAAACTCTTTCGTGAAGATTTGTGTTATTTGTAAGCAAATCCATGGCTCGTGCACACAATGTTGCAAGTGTTCCACTTATTTTCATGCCATGTGTGCATCAAGGGCCGGTTATCGCATGGAGTTGCATTGTTCAGAGAAAAATGGTAAACAGACAACAAGAATGGTTTCTTATTGTGCTTATCACAGGGCTCCCAATCCAGACACTGTTTTGATCATACACACTCCTCAAGGGGTCATTTCAACTAAAATCCTTATCCAAAAAAAGAGAAAAGTCGGGTCAAGATTAATTTCATCGAACCGAATAAAGGAAGAAGACACTCCTCTACCAGATAACACCGAACATGATCCATTTTCTGCTGCTAGGTGCCGAATCTTTGTAAGAATAAACCGCACAAAAAAGAGAGCAGCCGATGAAGCCGTTCCTCATAAAGTGAGGGGTCACTGCCGTCATCCTCTAGATGCAATTCAGAGATTAAATCCATGCAAAGTGGTAGACGAGTCTCGGACATTTTCATCATTTAAGGAACGCCTTCATCACCTACAGAGAACCGAAAATGAACGAGTGTGCTTCGGTAGATCAGGCATACATGGATGGGGCTTGTTTGCACGAAGAGTTATTCAAGAAGGAGAAATGGTCCTTGAATATCGTGGCGAACAAGTAAGGCGCAGCGTTGCAGACCTGAGGGAGGCACGCTACAAATTAGAAAGGAAAGACTGCTATCTTTTCAAAATAAGTGAAGAAGTGGTAGTTGATGCAACCGATAAGGGAAATATAGCGCGGTTAATTAACCATTCTTGTATGCCAAATTGCTATGCAAGAATCATGTCTGTGGGTCATGACGAGAGCCGGATCGCACTCATTGCCAAGACTAAAGTATCTGCCGGTGACGAGCTAACGTATGTTATCTATCTATGCTCACCTCTTGTCGGCCATGCTTTCCTGTGTCATTTCAACATGCATTTTGGAGTAAATCATCATTTTGGTCCCAAAAATTGA 3150 0.4197 MIIKKNLKSEMPTRKRGRLGNSEENESSRLTQRNKKKKFNGNFPMNLLAGAIPASFTGLLGATVATTVATSDNGFDLSNGKPDVKNAANRPPLVRTSRGRLQVLPSRFNDSVIVNWRKEGRNNSNNAAAADTSFREFEFDEFGFKNYGGKGKNGNGNGNGMAGSRNRPRGYSVLCEEVLHKNFGVAAGKELSLREIFEETKINNEVLKKEEEKKEGLFGPEDFYAGDIVWAKAKKKEPFWPAIVIDPIHQAPELVLRSCIADAACVMFLGYSGNENHRDFAWVKYGMIFPFVDYADRFQEQSELSFCNSSQFQVAIEEAFLADQGFVENLNEDLSAVAGNNGCSNSSILKVFQNVAASNKNEGGPVQKKNLFEREKNARLCAECGLDVPLNMSRKKKDLTPSGQLLCKTCARLTKSKHYCGICKKVWNQSDSGSWVRCDGCKVWVHAECDKISSILFKNLGSTDYFCPACKVKFNFELSDSEKSNPKVKWNKKNGQLGLPKKVTVLCNGVEGIYFPSIHLVMCKCGFCDTEKQALSEWERHTGSKFRNWRTSIRIKGSMISLEQWMLQLAEFHAKAVVYVKPKRPSTKERKQKLLNFLQDKYEPVCAKWTTERCAVCRWVEDWDYNKIIICVRCQIAVHQECYGARNVRDFTSWVCKACETPDITRECCLCPVKGGALKPTDVDPLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCSEKNGKQTTRMVSYCAYHRAPNPDTVLIIHTPQGVISTKILIQKKRKVGSRLISSNRIKEEDTPLPDNTEHDPFSAARCRIFVRINRTKKRAADEAVPHKVRGHCRHPLDAIQRLNPCKVVDESRTFSSFKERLHHLQRTENERVCFGRSGIHGWGLFARRVIQEGEMVLEYRGEQVRRSVADLREARYKLERKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGHDESRIALIAKTKVSAGDELTYVIYLCSPLVGHAFLCHFNMHFGVNHHFGPKN 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04879 1049 Gene3D - 220 325 - -
Vivi4g04879 1049 SUPERFAMILY FYVE/PHD zinc finger 417 475 IPR011011 -
Vivi4g04879 1049 SUPERFAMILY FYVE/PHD zinc finger 612 676 IPR011011 -
Vivi4g04879 1049 PANTHER PHD FINGER PROTEINS 37 495 - -
Vivi4g04879 1049 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 1043 IPR025780 -
Vivi4g04879 1049 ProSitePatterns Zinc finger PHD-type signature. 614 659 IPR019786 -
Vivi4g04879 1049 ProSiteProfiles Zinc finger PHD-type profile. 417 473 IPR019787 -
Vivi4g04879 1049 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 662 IPR013083 -
Vivi4g04879 1049 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 782 IPR013083 -
Vivi4g04879 1049 MobiDBLite consensus disorder prediction 1 33 - -
Vivi4g04879 1049 MobiDBLite consensus disorder prediction 1 38 - -
Vivi4g04879 1049 Pfam PWWP domain 226 319 IPR000313 -
Vivi4g04879 1049 ProSiteProfiles Extended PHD (ePHD) domain profile. 665 780 IPR034732 -
Vivi4g04879 1049 FunFam Histone-lysine N-methyltransferase 663 782 - -
Vivi4g04879 1049 CDD SET_SETD1-like 893 1018 - -
Vivi4g04879 1049 Pfam PHD-finger 626 660 - -
Vivi4g04879 1049 CDD PWWP_AtATX3-like 224 326 - -
Vivi4g04879 1049 CDD PHD_ATX3_4_5_like 613 659 IPR042011 -
Vivi4g04879 1049 SMART set_7 904 1028 IPR001214 GO:0005515
Vivi4g04879 1049 ProSiteProfiles PWWP domain profile. 225 294 IPR000313 -
Vivi4g04879 1049 SUPERFAMILY Tudor/PWWP/MBT 218 322 - -
Vivi4g04879 1049 Pfam PHD-finger 419 472 IPR019787 -
Vivi4g04879 1049 SUPERFAMILY SET domain 898 1018 IPR046341 -
Vivi4g04879 1049 Gene3D SET domain 830 1019 IPR046341 -
Vivi4g04879 1049 ProSiteProfiles SET domain profile. 904 1021 IPR001214 GO:0005515
Vivi4g04879 1049 FunFam Histone-lysine N-methyltransferase 879 1031 - -
Vivi4g04879 1049 Pfam SET domain 915 1018 IPR001214 GO:0005515
Vivi4g04879 1049 ProSiteProfiles Zinc finger PHD-type profile. 611 662 IPR019787 -
Vivi4g04879 1049 Pfam PHD-zinc-finger like domain 667 779 - -
Vivi4g04879 1049 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 414 474 IPR013083 -
Vivi4g04879 1049 CDD ePHD_ATX3_4_5_like 668 779 IPR041955 -
Vivi4g04879 1049 CDD PHD_TCF19_like 420 470 - -
Vivi4g04879 1049 SMART PHD_3 613 660 IPR001965 -
Vivi4g04879 1049 SMART PHD_3 419 471 IPR001965 -
Vivi4g04879 1049 SMART PHD_3 724 780 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04879 Vivi-Chr4 178524158 178532635 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04879 614 779 C2H2 Transcription Factor Family AT3G14740 34.286 1.01e-18 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi4g04879 zf-HC5HC2H_2 5e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04879 - - aprc:113853254 1471.83