Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04854 ATGGACTTTGATAGACTTGGACCCTCCGATCCCGGTGGTTCGTCGCGACGATCCACCGCGCCTCTAACAAACTCCGCCGCATCCAATTCCAACCAGAAAAGCAAAAACAAACTCATCATGCTTTCTATCCTCGCCGCGGCTTTAATCGTCGCCTCCGCCATCTCCGCCGCACTCATCACCGTTGTCCGTTCCCGCGCTTCAAACAATCAAACCACCTCAAACCTCCGCGCCAAACCGACTCAAGCAATCTCCCGAACCTGCAGCAGGACGAGATTCCCCACACTTTGCATCAACTCCCTCCTCGACTTCCCTGGCTCCACCTCCGCCTCCGAGCAACAACTAGTCCATATATCATTCAATATGACACATCGCCACATCAGCAAGGCACTCTTCGCGTCCTCAGGCCTCTCGTATACAGTCGCAGACTCCAAAGTCCGCGCTGCATACGAGGATTGCCTCGAACTAATGGACGAGTCCATGGACGCGATAAAGCTCTCCATGGACTCGCTCACTACCATGTCCTCGACTTTATCCCGCGACGACCAACAACCAGGTCTCGCAGGATCAAACGAGGACGTGATGACGTGGCTCAGCGCCGCGTTAACCAACCAAGACACTTGCCTGGAGGGATTTGACGACACTACCGGCACCGTTAAGGATCAGATGGTTGGAAACTTGAAGGACCTATCGGAACTCGTGAGTAACTCTCTGGCGATATTTTCGTCGAGTAGTGACGGTGATTTCACGGGAGTGCCGATACAGAACAAAAGAAGATTAATGGGAATTGATGATGAAAAGCGTGATGGTGATGTTATTGTCGGTGATATCTCGCGAGAATTTCCGGAATGGGTTCAGAAACGAGATAGGAGATTGTTGAGTTTACCGGTATCGGAGATACAAGCTGATATCGTCGTTTCAAAGAGTGGTGGCGACGGCACGGTGAAGACGATTGCGGAAGCTATTAAGAATGCGCCGGAGCATAGTAGCCGTCGATTCATAATCTACGTGAGGGCAGGAAGGTATGAAGAGAATAATTTAAAGATAGGAAAAAAGAAAACCAATATCATGTTTATTGGAGATGGGAAGGGCAAAACTGTCATTACAGGAAAGAAAAGTGTTGCTGATGGCATGACCACTTTCCACACCGCTTCCTTTGCTGCTAGTGGTGCTGGATTCATGGCACGTGATATCACATTTGAGAACTATGCAGGACCGGAGAAGCACCAAGCGGTCGCGCTCCGTGTTGGAGCCGATCACGCGGTGGTGTACCGCTGCAACATTTTAGGGTATCAAGACGCGTGCTATGTACACTCCAACCGTCAATTCTACCGCGAATGTAGCATCTATGGCACGGTTGATTTTATATTTGGAAATGCCGCGGTAGTTTTTCAAAAATGCAACATTTACGCGCGCAAGCCCATGGCCCAACAAAAGAACACAATCACAGCCCAAAATAGAAAAGACCCGAATCAAAATACGGGTATATCCATTCATGATTGTCGGATCCTGCCTGCCCCGGAGCTCGCCGCATCAAAGGGCAGCATTGAAACGTATTTGGGCCGTCCGTGGAAAATGTACGCTAGGACCGTTTATATGTTATCCTACATGAGTGATCATGTGCATCCACATGGATGGTTAGAATGGAATGGAGAATTCGCATTAAAAACTTTATATTACGGTGAGTACATGAACTATGGGCCGGGTGCAGCCATCGGGCAACGGGTCAAATGGCCCGGGTACCGAGTCATTACTTCTACGGTAGAGGCCAATAGATACACCGTGGCCCAATTCATCTCCGGTTCGTCGTGGTTACCATCCACCGGTGTGGCATTTTTGGCCGGGTTATCCACTTGA 1854 0.4978 MDFDRLGPSDPGGSSRRSTAPLTNSAASNSNQKSKNKLIMLSILAAALIVASAISAALITVVRSRASNNQTTSNLRAKPTQAISRTCSRTRFPTLCINSLLDFPGSTSASEQQLVHISFNMTHRHISKALFASSGLSYTVADSKVRAAYEDCLELMDESMDAIKLSMDSLTTMSSTLSRDDQQPGLAGSNEDVMTWLSAALTNQDTCLEGFDDTTGTVKDQMVGNLKDLSELVSNSLAIFSSSSDGDFTGVPIQNKRRLMGIDDEKRDGDVIVGDISREFPEWVQKRDRRLLSLPVSEIQADIVVSKSGGDGTVKTIAEAIKNAPEHSSRRFIIYVRAGRYEENNLKIGKKKTNIMFIGDGKGKTVITGKKSVADGMTTFHTASFAASGAGFMARDITFENYAGPEKHQAVALRVGADHAVVYRCNILGYQDACYVHSNRQFYRECSIYGTVDFIFGNAAVVFQKCNIYARKPMAQQKNTITAQNRKDPNQNTGISIHDCRILPAPELAASKGSIETYLGRPWKMYARTVYMLSYMSDHVHPHGWLEWNGEFALKTLYYGEYMNYGPGAAIGQRVKWPGYRVITSTVEANRYTVAQFISGSSWLPSTGVAFLAGLST 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04854 617 NCBIfam pectinesterase inhibitor domain 55 240 IPR006501 GO:0004857
Vivi4g04854 617 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 81 241 IPR035513 -
Vivi4g04854 617 MobiDBLite consensus disorder prediction 12 30 - -
Vivi4g04854 617 Gene3D - 296 615 IPR012334 -
Vivi4g04854 617 SMART PMEI_2 78 239 IPR006501 GO:0004857
Vivi4g04854 617 ProSitePatterns Pectinesterase signature 2. 448 457 IPR033131 -
Vivi4g04854 617 Gene3D Invertase/pectin methylesterase inhibitor family protein 80 242 IPR035513 -
Vivi4g04854 617 FunFam Pectinesterase 296 615 - -
Vivi4g04854 617 SUPERFAMILY Pectin lyase-like 299 614 IPR011050 -
Vivi4g04854 617 PANTHER PECTINESTERASE 50 605 - -
Vivi4g04854 617 Pfam Pectinesterase 302 600 IPR000070 GO:0030599|GO:0042545
Vivi4g04854 617 CDD PMEI-like_3 87 241 - -
Vivi4g04854 617 Pfam Plant invertase/pectin methylesterase inhibitor 82 239 IPR006501 GO:0004857
Vivi4g04854 617 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04854 Vivi-Chr4 177946029 177949715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04854 1 616 Carbohydrate Esterase AT5G53370 61.389 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04854 - - gmx:106796002 922.154