Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04853 ATGGACTTGGATAGCATTGAGTGTGTTTCATCTTCTGATGGAATGGATGAAGATGAGATCCAACATCGTATTCTTCATCCTCATCCACATCCACATCATCATCATCATCACTCTGAGTTTTCTTCATTGAAACCTCGTAATGGAGGAAACACTAATGTTAATAACATTAATCTTGTTGTTGGTTCTACAGCTATTGCTCCTGCTACCAGTGTTCATGAGTTGTTGGAATGTCCTGTTTGTACCAATTCAATGTATCCTCCAATTCACCAGTGCCACAATGGTCACACATTGTGTTCCACTTGTAAAACAAGGGTGCACAATCGATGTCCGACTTGTAGACAAGAGCTTGGAGATATCAGGTGTCTGGCACTAGAGAAGGTTGCTGAATCACTCGAGTTACCGTGCAAGTACTACTCTCTTGGATGTCCTGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACGGCGTGCAATTTTAGACCCTACACTTGTCCTTATGCCGGATCAGAGTGCCCCGCTGCTGGTGATATTAACTTCCTCGTTGCACATTTGAGGGATGATCATAAGGTCGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCGCGCGATGTAGAGAATGCTACTTGGATGCTCACCGTATTTCATTGTTTCGGCCAATACTTCTGTCTTCACTTCGAAGCTTTCCAACTAGGCATGGCTCCAGTTTACATGGCATTCCTCCGTTTCATGGGAGACGAGAACGATGCTCGAAACTATACATATAGCCTCGAAGTTGGAGCAAATGGAAGAAAACTCATTTGGGAAGGTACACCACGGAGTATCCGCGACAGCCACCGTAAAGTTCGAGATAGTCACGACGGACTCATAATCCAACGAAATATGGCCCTATTTTTCTCTGGTGGTGATAGGAAAGAACTGAAACTAAGAGTGACAGGAAGAATATGGAAAGAACAACAGAATCCAGATGGTGGAGTGTGTATACCAAATCTTTGCAGCTAA 1020 0.4363 MDLDSIECVSSSDGMDEDEIQHRILHPHPHPHHHHHHSEFSSLKPRNGGNTNVNNINLVVGSTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETACNFRPYTCPYAGSECPAAGDINFLVAHLRDDHKVDMHTGCTFNHRYVKSNPRDVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENDARNYTYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04853 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 181 IPR013083 -
Vivi4g04853 339 FunFam E3 ubiquitin-protein ligase SINAT3 129 185 - -
Vivi4g04853 339 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 53 324 - -
Vivi4g04853 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 129 IPR013083 -
Vivi4g04853 339 ProSiteProfiles Zinc finger SIAH-type profile. 130 190 IPR013010 GO:0008270
Vivi4g04853 339 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 182 318 IPR008974 GO:0005515
Vivi4g04853 339 MobiDBLite consensus disorder prediction 26 40 - -
Vivi4g04853 339 FunFam E3 ubiquitin-protein ligase SINAT5-like 186 318 - -
Vivi4g04853 339 CDD Sina 191 319 - -
Vivi4g04853 339 Pfam Seven in absentia protein family 119 318 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vivi4g04853 339 MobiDBLite consensus disorder prediction 25 47 - -
Vivi4g04853 339 SUPERFAMILY TRAF domain-like 130 322 - -
Vivi4g04853 339 SUPERFAMILY RING/U-box 54 119 - -
Vivi4g04853 339 CDD RING-HC_SIAHs 75 113 - -
Vivi4g04853 339 ProSiteProfiles Zinc finger RING-type profile. 77 113 IPR001841 -
Vivi4g04853 339 FunFam E3 ubiquitin-protein ligase SINAT3 12 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04853 Vivi-Chr4 177938875 177941989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04853 61 325 C3H Transcription Factor Family AT2G41980 77.239 8.32e-159 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04853 K04506 - qsa:O6P43_015002 635.565