Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04831 ATGGCTTCGTCTTCTTCACCAACAACAACATTGAGCCGGCGAAGAACACAAGCTCCGATTCCAGCTCCGAAGAAACTCTCCAACTTCGACGACGTCGTTTGCCAGAAATGCAGCTCCGGCAAATCCCCAACCAAGTTGCTCCTCTGCGACAAATGCGACAAAGGCTATCATATCTTCTGCCTCTCACCAATCCTTGCTAAAGTTCCCAAATCTTCGTGGTTCTGTCCCTCTTGCTCCCAATCCACCTCCAACAACCCTAAATCTTTTCCTCTTGTACAGACGAAGATTATTGATTTCTTCAAAATCCAACGGTCTTCTGAAGCATCTCAGATTTTGAACCAAGATTTAAAGAAGAAGAGAAAGAGGGGTAGTGGTTTGGTGGTTTCAAAGAAGAAGAGGAAGCTGTTGGCGTTTACTCCGAGTGATGATTCCAAGAGGAGATTAGTACAGATGGCTTCGTTGGCAACTGCGTTGACTGCAACTAAAACGGATTTCAGTAATGAGCTTACTTATATGCCTGGAATGGCACCTAGGGATGCTAATTCTCCTTCTCTTGAACATGGTGGAATGCAGGTAATGTCTAAAGAAGACATTGAGACTCTTAACTTGTGCAGAAGTATGATGGAAAGAGGAGAATGTCCACCCCTCATGGTTATTTTTGATCCTGTAGAAGGCTTCACTGTAGAAGCAGACAAATCTATCAAAGATTTGACAATAATAACAGAATATGTTGGCGATGTAGATTTTCTAAAGAATCGGGAATATGATGATGGGGATAGCATTATGACACTTCTTTTCGCTTCTGATCCTTCACAATCGCTGGTCATCTGCCCAGATAAACGCAGCAACATAGCACGATTTGTTAATGGCATCAACAATCACACACCTGAAGGAAAAAAGAAGCAGAACTTGAAATGTGTGAGATTTAATGTGGATGGTGAATGTCGGGTCCTTTTAGTTGCTATTAGAGATATAGCTAAGGGGGAAAGACTGTACTATGACTACAATGGATATGAACATGAATATCCAACTGAACACTTTGTCTAA 1047 0.4212 MASSSSPTTTLSRRRTQAPIPAPKKLSNFDDVVCQKCSSGKSPTKLLLCDKCDKGYHIFCLSPILAKVPKSSWFCPSCSQSTSNNPKSFPLVQTKIIDFFKIQRSSEASQILNQDLKKKRKRGSGLVVSKKKRKLLAFTPSDDSKRRLVQMASLATALTATKTDFSNELTYMPGMAPRDANSPSLEHGGMQVMSKEDIETLNLCRSMMERGECPPLMVIFDPVEGFTVEADKSIKDLTIITEYVGDVDFLKNREYDDGDSIMTLLFASDPSQSLVICPDKRSNIARFVNGINNHTPEGKKKQNLKCVRFNVDGECRVLLVAIRDIAKGERLYYDYNGYEHEYPTEHFV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04831 348 SMART set_7 214 342 IPR001214 GO:0005515
Vivi4g04831 348 SUPERFAMILY SET domain 206 336 IPR046341 -
Vivi4g04831 348 Gene3D SET domain 120 348 IPR046341 -
Vivi4g04831 348 ProSitePatterns Zinc finger PHD-type signature. 34 78 IPR019786 -
Vivi4g04831 348 FunFam Histone-lysine N-methyltransferase ATXR5 119 348 - -
Vivi4g04831 348 SUPERFAMILY FYVE/PHD zinc finger 30 82 IPR011011 -
Vivi4g04831 348 MobiDBLite consensus disorder prediction 1 24 - -
Vivi4g04831 348 ProSiteProfiles SET domain profile. 214 336 IPR001214 GO:0005515
Vivi4g04831 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 97 IPR013083 -
Vivi4g04831 348 Pfam SET domain 261 336 IPR001214 GO:0005515
Vivi4g04831 348 MobiDBLite consensus disorder prediction 1 16 - -
Vivi4g04831 348 ProSiteProfiles Zinc finger PHD-type profile. 31 81 IPR019787 -
Vivi4g04831 348 Pfam PHD-finger 33 80 IPR019787 -
Vivi4g04831 348 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 104 346 - -
Vivi4g04831 348 SMART PHD_3 33 79 IPR001965 -
Vivi4g04831 348 CDD SET_ATXR5_6-like 211 348 - -
Vivi4g04831 348 CDD PHD_RSF1 34 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04831 Vivi-Chr4 177720607 177722985 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04831 18 97 C2H2 Transcription Factor Family AT3G01460 28.395 1.05e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi4g04831 PHD 2.9e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04831 K24406 - gmx:100775247 530.791