Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04801 ATGCCTCCTCAACTCCGAACCAGAAGAACCAAACAACAAAACCCGAACCCGGACCCGAATCATAACCCGATCACGAAACCCGAAACTGCTCGTGGTAGAAGAGGTAGACCAGCGAGAAACCGCAACGTCGCTTTTGCTGCACGTGATGATCAAATCGATAACCGTTTGTTTCTGAATAATAACGAAGAAGAAAACGAACCTCACATGCCTCCGGTTAGGTTTGGTGGGGATATTAAGCAGGATATTATGGAGGATGACTGTGGTAGCGGTGGTCGGAGTCCCGGTAAAGCTCCGGTAGCTGAAGAGGAAGGAAGTACACCTCCCATTCCTGAAAAAGTCCAGGTAGGTGGTTCACCGTTGTATAGAGTAGATAGAAAGCTTGGGAAAGGAGGGTTTGGACAAGTTTATGTCGGTCGCCGTGTCGGTGCCGGAGCAGGAGCTCTTGAGGTAGCTCTGAAGTTTGAGCATAAAAGCAGTAAAGGGTGTACTTATGGACCTCCTTCCGAGTGGCAGGTTTACAATGTATTAGGTGGTAGTCATGGTGTCCCACGAGTTCATTACAAGGGACGGCAAGGTGATTTCTATATTATGGTCATGGATATTCTTGGCCCTAGTTTGTGGGATGTATGGAATAACAAGACACTCACGATGTCTGCTGAAATGGTGGCATGTATAGCAATTGAGGCTGTCTCCATATTAGAGAAGATGCATTCTAGAGGATACGTACATGGTGATGTAAAACCAGAGAATTTTTTGCTTGGTTGTCCGGGAACTCATGAAGAGAAAAAGCTTTTTCTGGTTGATCTTGGATTAGCATCCCGTTGGCGTGATAATTCGACTGGTCTCCATGTTGAGTACGATCAACGTCCAGATGTATTCAGGGGAACGGTTCGATATGCTAGTGTACATGCTCATCTTGGTAGGACAGGTAGCAGAAGGGATGATTTAGAATCTCTTGCTTACACACTAATTTTCCTTCTTCGTGGACGGCTACCTTGGCAAGGATACCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAGAAAATGGCCACCTCACCAGAAAATATGTGTATCCTTTGTCCTGCACCTTTCCGGCAGTTTATTGAGTACGTTGTGAATTTGAAGTTTGACGAAGAACCAAATTATGCCAAGTACATATCACTTTTCGACGGAATTGTTGGTCCAAATCCAGACATTAGACCCATAAACACTGATGGTGCACAGAAGCTTATATATCAGGTTGGACAGAAGAGAGGACGATTGACCATGGAAGAAGATGATGACGAACACCCAAAGAAGAAAGTTAGAGTGGGAATGCCAGCAACCCAATGGATTAGTGTGTACAGTGCACGCCGGCCTATGAAGCAAAGGTACCATTACAATGTTACTGATATGCGGTTGTCCCAACACATTGAGAAGGGGTATGAAGATGGGTTGTTTATCAGCAGTGTAGCTTGTTGTTCTAACCTTTGGGCACTGATTATGGATGCCGGCACTGGTTTCACTGCACAAGTTTATGAACTCTCATCCTACTTTCTTCACAAGGAATGGATTATGGAACAGTGGGAAAAAAACTATTACATTAGCGCCATAGCAGGATCTAATAATGGGAGCTCGTTGGTTGTAATGTCGAAAGGGACCCAATACTTGCAGCAATCTTACAAGGTCAGTGAATCATTTCCATTCAAGTGGATTAATAAAAAATGGAAAGAAGGATTTTTTGTCACTGCTATGGCCACTTCTGGAAGTAGATGGGCAATTGTTATGTCTCGTGGTGCTGGATTTACAGAGCAGGTTGTGGAGCTTGATTTCCTGTATCCTAGTGAAGGTATTCATCGAAGGTGGGAAAACGGTTACCGCATCACTTCAACTGCTGCCACATATGACCAGGCTGCTTTTGTTCTTAGTATTCCAAGAAAAAAACTGGGTGATGAAACTCAAGAGACACTCCGTACATCTGACTTTCCTAGTACTCATGTCAAGGAAAAATGGTCAAAGAATCTCTATATTGCATCTATTTGCTATGGAAGAACAGTCTGA 2043 0.44 MPPQLRTRRTKQQNPNPDPNHNPITKPETARGRRGRPARNRNVAFAARDDQIDNRLFLNNNEEENEPHMPPVRFGGDIKQDIMEDDCGSGGRSPGKAPVAEEEGSTPPIPEKVQVGGSPLYRVDRKLGKGGFGQVYVGRRVGAGAGALEVALKFEHKSSKGCTYGPPSEWQVYNVLGGSHGVPRVHYKGRQGDFYIMVMDILGPSLWDVWNNKTLTMSAEMVACIAIEAVSILEKMHSRGYVHGDVKPENFLLGCPGTHEEKKLFLVDLGLASRWRDNSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPENMCILCPAPFRQFIEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTDGAQKLIYQVGQKRGRLTMEEDDDEHPKKKVRVGMPATQWISVYSARRPMKQRYHYNVTDMRLSQHIEKGYEDGLFISSVACCSNLWALIMDAGTGFTAQVYELSSYFLHKEWIMEQWEKNYYISAIAGSNNGSSLVVMSKGTQYLQQSYKVSESFPFKWINKKWKEGFFVTAMATSGSRWAIVMSRGAGFTEQVVELDFLYPSEGIHRRWENGYRITSTAATYDQAAFVLSIPRKKLGDETQETLRTSDFPSTHVKEKWSKNLYIASICYGRTV 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04801 680 Gene3D Transferase(Phosphotransferase) domain 1 100 437 - -
Vivi4g04801 680 Pfam Protein kinase domain 121 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04801 680 MobiDBLite consensus disorder prediction 1 19 - -
Vivi4g04801 680 PANTHER CASEIN KINASE-RELATED 121 642 - -
Vivi4g04801 680 FunFam casein kinase 1-like protein HD16 94 437 - -
Vivi4g04801 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Vivi4g04801 680 MobiDBLite consensus disorder prediction 82 116 - -
Vivi4g04801 680 ProSitePatterns Protein kinases ATP-binding region signature. 127 153 IPR017441 GO:0005524
Vivi4g04801 680 CDD STKc_CK1 121 390 - -
Vivi4g04801 680 MobiDBLite consensus disorder prediction 1 46 - -
Vivi4g04801 680 SUPERFAMILY Protein kinase-like (PK-like) 121 396 IPR011009 -
Vivi4g04801 680 ProSiteProfiles Protein kinase domain profile. 121 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04801 680 SMART serkin_6 121 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04801 Vivi-Chr4 177373507 177378492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04801 115 348 AGC Kinase Gene Family AT3G08730 23.077 1.69e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vivi4g04801 Pkinase 6.4e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04801 - - rcu:8275677 1099.35