Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04797 ATGGAGGGAACAAACAACATTTTCCAAACCACCTTTTGCCCACAAATTCCATCCGACAACAACAATGCCGACACCAATATCACTGCCACGGCCGCGGCCGACCAATTCATTGTTGAGGACCTCCTTAACCTCTCATTCGACGATGCTGACATCATTTCTGATGCCAGTATCCTTGACTCCGCCACTGGGAACTCATCAGCCTCCTCTTCAACGACCGCTATTGTTAATAGCTGTAACTCCTCGGCATTTTCCGGGTTTGACACCAATCTTATTCCTGATAATGGCTGGCACAATAATATCTCTGACTGCCATTTCTCCGGAGACCTTTGTGTTCCGGAGGATGATTTAACCGATGCGGGTTGGCTTACCAATATTGTGGACGATTCGTTTTCGGGTGAGGAACTTGAAAAGATGCAACTGATATCAGGAATGAAGGTGCCAAACAAGGACGGAGAGGCCCGTGAGGTTTCCCAGCTGAGCCGAAACAGCCCAATTTTTGATAATGAAGTGTCGGTTCCAGCTAAGGCCCGTAGCAAGAGGACGCATCAGCCCCCTTGCGACTGGACCTCGCGTCTTCTTTTTCTTTCTGAAGCTGCCTCGTCTTCTTATGAGCCAGAACTCCTTATACCTACTCCAACCCTACCCTCCGTCACAGTTCCAAAGAAGCAGGCAAAGACTACTCCGAGAAGAAAGGACAATTGTGACGGAGGGTCGGGTGGGGATGGTCGCAGATGTCTACATTGTGCAACGGACAAAACGCCTCAGTGGCGAACTGGGCCTAAAGGCCCAAAGACTTTATGCAATGCGTGTGGTGTAAGATATAAGTCAGGCCGGTTGGTGCCCGAATACAGACCTGCAGCAAGCCCAACATTTGTGATGACCAAACACTCTAACTCGCATCGAAAAGTGTTGGAACTACGGAGACAGAAGGAAATGTCGCAGACCCATCCACACCAACACAATCAGTTCTTACAACATCAGAATATGATGTTTGATATGACGCCCAATGCCGACGATTATTTGATTCATCAACATGTCGGGCCAGATTTTAGACATCTGCTCTAA 1065 0.4845 MEGTNNIFQTTFCPQIPSDNNNADTNITATAAADQFIVEDLLNLSFDDADIISDASILDSATGNSSASSSTTAIVNSCNSSAFSGFDTNLIPDNGWHNNISDCHFSGDLCVPEDDLTDAGWLTNIVDDSFSGEELEKMQLISGMKVPNKDGEAREVSQLSRNSPIFDNEVSVPAKARSKRTHQPPCDWTSRLLFLSEAASSSYEPELLIPTPTLPSVTVPKKQAKTTPRRKDNCDGGSGGDGRRCLHCATDKTPQWRTGPKGPKTLCNACGVRYKSGRLVPEYRPAASPTFVMTKHSNSHRKVLELRRQKEMSQTHPHQHNQFLQHQNMMFDMTPNADDYLIHQHVGPDFRHLL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04797 354 SMART GATA_3 239 289 IPR000679 GO:0006355|GO:0043565
Vivi4g04797 354 PIRSF Txn_fac_GATA_plant 19 334 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vivi4g04797 354 ProSiteProfiles GATA-type zinc finger domain profile. 239 275 IPR000679 GO:0006355|GO:0043565
Vivi4g04797 354 Gene3D - 241 324 IPR013088 GO:0006355|GO:0008270
Vivi4g04797 354 FunFam GATA transcription factor 236 322 - -
Vivi4g04797 354 ProSitePatterns GATA-type zinc finger domain. 245 270 IPR000679 GO:0006355|GO:0043565
Vivi4g04797 354 CDD ZnF_GATA 247 291 IPR000679 GO:0006355|GO:0043565
Vivi4g04797 354 Pfam GATA zinc finger 245 278 IPR000679 GO:0006355|GO:0043565
Vivi4g04797 354 MobiDBLite consensus disorder prediction 214 241 - -
Vivi4g04797 354 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 240 303 - -
Vivi4g04797 354 PANTHER GATA TRANSCRIPTION FACTOR 28 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04797 Vivi-Chr4 177326450 177328048 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04797 96 354 C2C2-Gata Transcription Factor Family AT5G25830 54.182 2.10e-88 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi4g04797 GATA 1.5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04797 - - psat:127091887 643.269