Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04796 ATGAAAAAGCAAACTCAATTTTCATGTTCATATGTACAAACACTAGTATCAATATTTTGTTCAATCCTTCTTCTTTTCCATCAAAAGTGTTTAGCAAAGCATCACCAACCATGTCCAGCATCATCATGCGGGAAAATACAAAACATAACATATCCATTCCGTCTCAAAACCGATCCAAACCACTGCGGCGATACAAGGTACGAATTAGATTGCGATGAAAATGGTGCATCATTAACTATGTTTTCTGGTAAATATTATGTTCAAGATATAGATTACACGAGATTTAAAATTTCATTAAGTGACGCGGGTGCAGTGGAAGATGCTAACTGTTCTTTCATCCCACGGTACTTTTTATATGATCGAAGTTTCAATAATGTCCTCTTTGGTGAAGAGGATTTTGGATCTGATCAGCCGTTCGTTTTGGATCCGATAAATCCAACGAGAATCGCGTATTTCAATTGTTCTAATCCAATAAATGATCCACGGTACGTTAAGGTGGGCACAAGTCGTTGTAGCATACAAGGGAATAGTCATGTGTATGCAGTTTTGGAACCATCTTTGTTTGAGTATAGAGTTGAGGACATTAAGGTTGGGTGTGATTTTATGGTGGCTACGTTAGGTAAGGAACTGTCGGAGGATACGAAAGGGAAGGTTTCTTATGATGAGATTCGTGGAATGATAATCGATGGCGTTGAGGTTTCATGGTTGCCTGTGATTTGCGAAAGTCGATGTGGAAAAGGGACGAGTTGTAAGGTTGTTGATGAAAAAAGTGGAGAAGTTCAATGTGATAAGCGCTTCTGTCATTATGCATACCAAACAACGGATAAGTGCGAACTTCAGCACCAGATATTCGGTTATACTCGAGCATATCTTAGAGGCATTTTTATTGGACTTGGAAGTAGGGTCACATTTAGCACAAGACAATTGGACAACCCAGTTGGACTAGAATATTTTGATGGAGGAATATTCATAGGAAGAAATGTTATACCATTATTCATAGCAGCCAGAATTCTTTTTGGAGTTATGCTTCTTCTGGTGCTATTTATCTATAAATGGAGAAGAAGACATGTATCAATGTATGATAACATTGAAAACTTTCTGTTAGAAAGCAATCTAAATCCGATTCGGTATGAATACAAAGAAATCAAGAAGATGACAGGAGGTTTAAGAGTGAAATTAGGTCAAGGAGGTTTCGGTGCGGTATACAAAGGAAAGCTAAGAAGTGGACCCGATGTTGCGATAAAGATTTTGACAAAAACCAATGTTAATAATGGACAGGATTTTATTAATGAAGTTGCGACTATTGGAAGAATACATCATGTTAATGTAGTACGTCTTGTCGGATATTGTGTTGAAGGAAAAAAGAGTGCATTGATATACGAATTCATGCCGAATGGATCGTTGGATAAATACATTTTTCCTAAAGAAGGGACTATTCCTTTGAGTTACGAGAAAATATATGAAATATCTCTTGGAATAGCTCATGGAATAGCGTATTTGCATCAAGGTTGTGATATGCAAATTCTTCATTTTGATATCAAGCCTCATAATATTCTTCTAGATGAGGATTTTGTTCCAAAGGTTTCGGATTTCGGACTTGCAAAACTATATCCTGTGAACGATAGCATTGTCCCGTTAACAGCTGCAAGAGGAACATTGGGTTACATGGCTCCTGAATTGTTCTACAAAAATATTGGTGGAGTGTCTTACAAGGCCGATGTATATAGCTTTGGAATGCTTTTGATGGAAATGGCCGGTAAGAGAAAGAATTCCAACCCTAACGCGGAACATTCGAGTCAACATTACTTCCCGTTTTGGATTTACGATAAATTTAAAGAAGAGAAAGATATTGACATAATGGAAAATGTCTCAGAAGAGGGAATGCCTATAGCGAAAAAGATGTTCATGGTTGCACTTTGGTGTATTCAGTTGAAACCGAATGATCGTCCTTCAATGAACAAAATAGTAGAGATGCTTGAAGGAAAAACCGAAAGCCTTGAATTGCCTCCAAGGCCTTCTTATTATCCAAATGAAAATTATAAACATCAAGATGAAGTGAACTCTGACCAAACATCATGGAGTGATATCTCTAGTATTGGCCAAACCTCAACTAATTACTCATTGGACAATGGTTCTTGA 2139 0.3731 MKKQTQFSCSYVQTLVSIFCSILLLFHQKCLAKHHQPCPASSCGKIQNITYPFRLKTDPNHCGDTRYELDCDENGASLTMFSGKYYVQDIDYTRFKISLSDAGAVEDANCSFIPRYFLYDRSFNNVLFGEEDFGSDQPFVLDPINPTRIAYFNCSNPINDPRYVKVGTSRCSIQGNSHVYAVLEPSLFEYRVEDIKVGCDFMVATLGKELSEDTKGKVSYDEIRGMIIDGVEVSWLPVICESRCGKGTSCKVVDEKSGEVQCDKRFCHYAYQTTDKCELQHQIFGYTRAYLRGIFIGLGSRVTFSTRQLDNPVGLEYFDGGIFIGRNVIPLFIAARILFGVMLLLVLFIYKWRRRHVSMYDNIENFLLESNLNPIRYEYKEIKKMTGGLRVKLGQGGFGAVYKGKLRSGPDVAIKILTKTNVNNGQDFINEVATIGRIHHVNVVRLVGYCVEGKKSALIYEFMPNGSLDKYIFPKEGTIPLSYEKIYEISLGIAHGIAYLHQGCDMQILHFDIKPHNILLDEDFVPKVSDFGLAKLYPVNDSIVPLTAARGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMAGKRKNSNPNAEHSSQHYFPFWIYDKFKEEKDIDIMENVSEEGMPIAKKMFMVALWCIQLKPNDRPSMNKIVEMLEGKTESLELPPRPSYYPNENYKHQDEVNSDQTSWSDISSIGQTSTNYSLDNGS 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04796 712 CDD STKc_IRAK 393 661 - -
Vivi4g04796 712 ProSitePatterns Serine/Threonine protein kinases active-site signature. 508 520 IPR008271 GO:0004672|GO:0006468
Vivi4g04796 712 FunFam PR5-like receptor kinase 463 670 - -
Vivi4g04796 712 ProSiteProfiles Protein kinase domain profile. 387 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04796 712 MobiDBLite consensus disorder prediction 667 712 - -
Vivi4g04796 712 Pfam Wall-associated receptor kinase galacturonan-binding 38 101 IPR025287 GO:0030247
Vivi4g04796 712 SMART serkin_6 387 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04796 712 Gene3D Phosphorylase Kinase; domain 1 364 462 - -
Vivi4g04796 712 MobiDBLite consensus disorder prediction 686 712 - -
Vivi4g04796 712 Gene3D Transferase(Phosphotransferase) domain 1 463 668 - -
Vivi4g04796 712 Pfam Protein kinase domain 392 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04796 712 FunFam serine/threonine-protein kinase PBS1-like 358 462 - -
Vivi4g04796 712 ProSitePatterns Protein kinases ATP-binding region signature. 393 415 IPR017441 GO:0005524
Vivi4g04796 712 SUPERFAMILY Protein kinase-like (PK-like) 379 689 IPR011009 -
Vivi4g04796 712 PANTHER RUST RESISTANCE KINASE LR10-RELATED 360 680 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04796 Vivi-Chr4 177307789 177310445 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04796 39 703 Receptor kinase-like Gene Family AT5G38260 34.963 2.92e-103 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04796 Pkinase 6.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04796 - - gmx:100820366 1034.25