Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04794 ATGTGGTCCGGGAAAATTATATTGCTACTGTTTTGGCTTCTACTCCAACAAGGTAGCAGCAGCATCACTCCAACTGAGCAAGGCCATGTTTGTCCACCTTCATCTTGTGGCAAAATTTCCATCATAAGTTATCCATTTCGATTAAAACATGACCCATCACATTGCGGTGACAGCAGGTATCAACTATCTTGTGAAAATAATGTAACAACTTTACATTTATACTCTGCAAAATATCATGTAGAATCCATAAACTACAACAATCTTACTATCCGGCTAGTTGATCCTGGACTCCAACAATCTAATCTCTCTTCACTTTCTCGCTATTCATTATCTCGATCAAACTTCTGTGATACTTATGATTACAACAACGAACAGTGCAATGATCCATACCATGCTGTTTCTGATAAAGAAAGATATTTCAGCGAGGGCGCAGGTTACAACGAGCTTCTTTTTCAGCATGTAGTTTACTTGAACTGTAGTCATCAGGTCACTAACAATTCTAAATACGTTAATATTTCTTCTCGTTTTCTCAAATCCGAAACTGGCTATTATATCTATGTTATAGCTGGTGATTTAATTGCTGAGGACTTTCAAGTTGGTTGTGAAGTGAAACTGGTTTCACCCACTTCTTGGAAGTGGAATTTGAAAGGAAATAGTCTCACCTATGATGTGATTCACAAGGCATTAGTGTATGGGTTTGAGGTATCATGGTTGCATCTTTCTTGTATTAATCTTTGTGGAGATTCGACGCTATGTTACTTCAATGCTTCCAATACTCCAATTCTTCAATGCTTTCAACAAACAATGTGCCTTACTTTCATGGGATATTGGACCACTGGTAGTTGCGGGATATCGTCTCAGATGACTTCATATGCTAAAGATACTATCACTGCTATCTGGATAGGACTGGTTGAAATAATCAAAGGGCCAAACTCAAATTATGAAGGTCAGATCAACTATAAAGTAGGATTGACCGTAGGACACTATGTTCTGCCATCGTTATTCGCGGCTAGATTGCTCTTTGGAGTAACATTTTTTATTTCACTGCTGATATACAAATGGAGGAAAAGACACTTGTCCATGTATGAATGTATTGAACTATATTTACAACAAGAAAACAATTTGATACCCATTAGATACTCATATAAAGAAATTAAGAAAATGGCTGGAGGTTTCAAAGATAAGTTGGGTAAAGGAGGATTTGGCTCTGTGTTTAAGGGACACCTGCGTAGTGGACCTTGTGTGGCGATCAAGATGTTGGATAATTCAAAAGGTAGTGGACAAGATTTCATTAATGAAGTTACGACCATTGGAAGAATACATCATTTGAATGTGGTGCAATTACTTGGATTTTGTATTGAAGGATCAAAACGCGCTCTTGTTTATGAGTTCATGCCTAATAGATCGCTTGATCAATTTATTTTCTCTAAAGAAGGGAGTGTAAATTTAAGCTACAACCAAATTCATGATATTTCAATTGGAGTAGCACGTGGGATTGCTTATCTCCACCATGGATGTGAAATGAAGATTTTGCATTTTGATATCAAGCCCCACAATATCTTGCTTGATGGGAACTTCGTCCCAAAGATATCGGATTTTGGACTCGCGAAGCTATATCCAGTCCAAAATAACACTATCACAATGACTGCGGCTAAAGGCACAATTGGATATATGGCTCCTGAATTGTTCTACAAAAATATTGGAGGAGTGTCATATAAGGCCGATGTTTATAGCTTTGGGATGCTTTTGATGGAGATGGCAAGCAAGAGAAAAAACTTGAATACTAATGCAGCGCATTCAAGTCAACATTATTTCCCTTCTTGGATTTATGATCAACTTGAGAAAGAGGAAGAGATAGAAGTTGAAAACGTGACAGAGGAGGACATGAAAATAGTAAAGAAGATGATCATAATTGCTCTTTGGTGTATACAAATTAATCCAAATAATCGCCCATCAATGAGTAAAGTAGTGGAGATGCTTCAAGGAGAAATTAAAAGTCTTGAAATGCCTCCAGAGCCATCCATTTATCCAGATGAAGTGATTTCGCTAGACGAATCAACCAACTCAAGCCAAACAATATCGCTTGACTTGATTAGTTCTAAGGATTCTGAAGAAAACTTAACTAGACCTCTTGTAGAGAAAAATTACTGA 2151 0.3728 MWSGKIILLLFWLLLQQGSSSITPTEQGHVCPPSSCGKISIISYPFRLKHDPSHCGDSRYQLSCENNVTTLHLYSAKYHVESINYNNLTIRLVDPGLQQSNLSSLSRYSLSRSNFCDTYDYNNEQCNDPYHAVSDKERYFSEGAGYNELLFQHVVYLNCSHQVTNNSKYVNISSRFLKSETGYYIYVIAGDLIAEDFQVGCEVKLVSPTSWKWNLKGNSLTYDVIHKALVYGFEVSWLHLSCINLCGDSTLCYFNASNTPILQCFQQTMCLTFMGYWTTGSCGISSQMTSYAKDTITAIWIGLVEIIKGPNSNYEGQINYKVGLTVGHYVLPSLFAARLLFGVTFFISLLIYKWRKRHLSMYECIELYLQQENNLIPIRYSYKEIKKMAGGFKDKLGKGGFGSVFKGHLRSGPCVAIKMLDNSKGSGQDFINEVTTIGRIHHLNVVQLLGFCIEGSKRALVYEFMPNRSLDQFIFSKEGSVNLSYNQIHDISIGVARGIAYLHHGCEMKILHFDIKPHNILLDGNFVPKISDFGLAKLYPVQNNTITMTAAKGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASKRKNLNTNAAHSSQHYFPSWIYDQLEKEEEIEVENVTEEDMKIVKKMIIIALWCIQINPNNRPSMSKVVEMLQGEIKSLEMPPEPSIYPDEVISLDESTNSSQTISLDLISSKDSEENLTRPLVEKNY 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04794 716 Gene3D Transferase(Phosphotransferase) domain 1 465 669 - -
Vivi4g04794 716 SUPERFAMILY Protein kinase-like (PK-like) 371 660 IPR011009 -
Vivi4g04794 716 FunFam serine/threonine-protein kinase PBS1-like 363 464 - -
Vivi4g04794 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Vivi4g04794 716 PANTHER RUST RESISTANCE KINASE LR10-RELATED 364 684 IPR045874 GO:0004672
Vivi4g04794 716 ProSiteProfiles Protein kinase domain profile. 390 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04794 716 Pfam Protein kinase domain 393 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04794 716 Gene3D Phosphorylase Kinase; domain 1 369 464 - -
Vivi4g04794 716 Pfam Wall-associated receptor kinase galacturonan-binding 31 94 IPR025287 GO:0030247
Vivi4g04794 716 ProSitePatterns Protein kinases ATP-binding region signature. 396 418 IPR017441 GO:0005524
Vivi4g04794 716 SMART serkin_6 390 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04794 716 FunFam PR5-like receptor kinase 465 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04794 Vivi-Chr4 177278094 177280702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04794 10 676 Receptor kinase-like Gene Family AT5G38260 34.161 8.49e-116 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04794 Pkinase 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04794 - - vvo:131596098 1411.36