Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04793 ATGTGGTCCGGGAAAATTATATTGCTACTGTTTTGGCTTCTACTCCAACAAGGTAGCAGCAGCATCACTCCAACTGAGCAAGGCCATGTTTGTCCACCTTCATCTTGTGGCAAAATTTCCATCATAAGTTATCCATTTCGATTAAAACATGACCCATCACATTGCGGTGACAGCAGGTATCAACTATCTTGTGAAAATAATGTAACAACTTTACATTTATACTCTGCAAAATATCATGTAGAATCCATAAACTACAACAATCTTACTATCCGGCTAGTTGATCCTGGACTCCAACAATCTAATCTCTCTTCACTTTCTCGCTATTCATTATCTCGATCAAACTTCTGTGATACTTATGATTACAACAACGAACAGTGCAATGATCCATACCATGCTGTTTCTGATAAAGAAAGATATTTCAGCGAGGGCGCAGGTTACAACGAGCTTCTTTTTCAGCATGTAGTTTACTTGAACTGTAGTCATCAGGTCACTAACAATTCTAAATACGTTAATATTTCTTCTCGTTTTCTCAAATCCGAAACTGGCTATTATATCTATGTTATAGCTGGTGATTTAATTGCTGAGGACTTTCAAGTTGGTTGTGAAGTGAAACTGGTTTCACCCACTTCTTGGAAGTGGAATTTGAAAGGAAATAGTCTCACCTATGATGTGATTCACAAGGCATTAGTGTATGGGTTTGAGGTATCATGGTTGCATCTTTCTTGTATTAATCTTTGTGGAGATTCGACGCTATGTTACTTCAATGCTTCCAATACTCCAATTCTTCAATGCTTTCAACAAACAATGTGCCTTACTTTCATGGGATATTGGACCACTGGTAGTTGCGGGATATCGTCTCAGATGACTTCATATGCTAAAGATACTATCACTGCTATCTGGATAGGTGAGTTCTTTAATCTTTCGACTTCTTTTTTACCCGTAGAGCAAACCTCATTGTTATTGTCATCTGTATTTAACATTACAGGACTGGTTGAAATAATCAAAGGGCCAAACTCAAATTATGAAGGTCAGATCAACTATAAAGTAGGATTGACCGTAGGACACTATGTTCTGCCATCGTTATTCGCGGCTAGATTGCTCTTTGGAGTAACATTTTTTATTTCACTGCTGATATACAAATGGAGGAAAAGACACTTGTCCATGTATGAATGTATTGAACTATATTTACAACAAGAAAACAATTTGATACCCATTAGATACTCATATAAAGAAATTAAGAAAATGGCTGGAGGTTTCAAAGATAAGTTGGGTAAAGGAGGATTTGGCTCTGTGTTTAAGGGACACCTGCGTAGTGGACCTTGTGTGGCGATCAAGATGTTGGATAATTCAAAAGGTAGTGGACAAGATTTCATTAATGAAGTTACGACCATTGGAAGAATACATCATTTGAATGTGGTGCAATTACTTGGATTTTGTATTGAAGGATCAAAACGCGCTCTTGTTTATGAGTTCATGCCTAATAGATCGCTTGATCAATTTATTTTCTCTAAAGAAGGGAGTGTAAATTTAAGCTACAACCAAATTCATGATATTTCAATTGGAGTAGCACGTGGGATTGCTTATCTCCACCATGGATGTGAAATGAAGATTTTGCATTTTGATATCAAGCCCCACAATATCTTGCTTGATGGGAACTTCGTCCCAAAGATATCGGATTTTGGACTCGCGAAGCTATATCCAGTCCAAAATAACACTATCACAATGACTGCGGCTAAAGGCACAATTGGATATATGGCTCCTGAATTGTTCTACAAAAATATTGGAGGAGTGTCATATAAGGCCGATGTTTATAGCTTTGGGATGCTTTTGATGGAGATGGCAAGCAAGAGAAAAAACTTGAATACTAATGCAGCGCATTCAAGTCAACATTATTTCCCTTCTTGGATTTATGATCAACTTGAGAAAGAGGAAGAGATAGAAGTTGAAAACGTGACAGAGGAGGACATGAAAATAGTAAAGAAGATGATCATAATTGCTCTTTGGTGTATACAAATTAATCCAAATAATCGCCCATCAATGAGTAAAGTAGTGGAGATGCTTCAAGGAGAAATTAAAAGTCTTGAAATGCCTCCAGAGCCATCCATTTATCCAGATGAAGTGATTTCGCTAGACGAATCAACCAACTCAAGCCAAACAATATCGCTTGACTTGATTAGTTCTAAGGATTCTGAAGAAAACTTAACTAGACCTCTTGTAGAGAAAAATTACTGA 2232 0.3714 MWSGKIILLLFWLLLQQGSSSITPTEQGHVCPPSSCGKISIISYPFRLKHDPSHCGDSRYQLSCENNVTTLHLYSAKYHVESINYNNLTIRLVDPGLQQSNLSSLSRYSLSRSNFCDTYDYNNEQCNDPYHAVSDKERYFSEGAGYNELLFQHVVYLNCSHQVTNNSKYVNISSRFLKSETGYYIYVIAGDLIAEDFQVGCEVKLVSPTSWKWNLKGNSLTYDVIHKALVYGFEVSWLHLSCINLCGDSTLCYFNASNTPILQCFQQTMCLTFMGYWTTGSCGISSQMTSYAKDTITAIWIGEFFNLSTSFLPVEQTSLLLSSVFNITGLVEIIKGPNSNYEGQINYKVGLTVGHYVLPSLFAARLLFGVTFFISLLIYKWRKRHLSMYECIELYLQQENNLIPIRYSYKEIKKMAGGFKDKLGKGGFGSVFKGHLRSGPCVAIKMLDNSKGSGQDFINEVTTIGRIHHLNVVQLLGFCIEGSKRALVYEFMPNRSLDQFIFSKEGSVNLSYNQIHDISIGVARGIAYLHHGCEMKILHFDIKPHNILLDGNFVPKISDFGLAKLYPVQNNTITMTAAKGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASKRKNLNTNAAHSSQHYFPSWIYDQLEKEEEIEVENVTEEDMKIVKKMIIIALWCIQINPNNRPSMSKVVEMLQGEIKSLEMPPEPSIYPDEVISLDESTNSSQTISLDLISSKDSEENLTRPLVEKNY 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04793 743 ProSiteProfiles Protein kinase domain profile. 417 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04793 743 Pfam Protein kinase domain 420 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04793 743 FunFam PR5-like receptor kinase 492 699 - -
Vivi4g04793 743 SUPERFAMILY Protein kinase-like (PK-like) 398 687 IPR011009 -
Vivi4g04793 743 PANTHER RUST RESISTANCE KINASE LR10-RELATED 391 711 IPR045874 GO:0004672
Vivi4g04793 743 SMART serkin_6 417 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04793 743 Gene3D Phosphorylase Kinase; domain 1 396 491 - -
Vivi4g04793 743 Pfam Wall-associated receptor kinase galacturonan-binding 31 94 IPR025287 GO:0030247
Vivi4g04793 743 Gene3D Transferase(Phosphotransferase) domain 1 492 696 - -
Vivi4g04793 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672|GO:0006468
Vivi4g04793 743 FunFam serine/threonine-protein kinase PBS1-like 390 491 - -
Vivi4g04793 743 ProSitePatterns Protein kinases ATP-binding region signature. 423 445 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04793 Vivi-Chr4 177278094 177280702 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04793 10 703 Receptor kinase-like Gene Family AT5G38260 32.865 1.25e-111 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04793 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04793 - - vvo:131596098 1476.46