Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04792 ATGATAACTGTAATAATCATATGCAGTCCATTTCTTTTCTTACACAAACTAATTTGGATGGCAATGTCACATTGTTTCATCACTCTACTGATTCTCCTCCTGCTTATCAATGCTAGCAGCAGTCATGATCATGATGAGTGCAGAGAATCATCCTTCCAACTCTTTGATGAATCATCCCAACATAAATGTCTTCATCCTCAGTATTGTCTATACTGTACTCAAAACAAGAAAACCATAATCTCACTCCCTACAACTTCAGGTCCAATTCAATTCTCCGTCGATGAAATTGATTATGAATCAAACCAGATTTCAGTTTCGGACCCGGAAAGTTGTCTTCCTACGAAGTTACTCATACTGAAACTTAACAGTTCACCATTTCTGCCTTACCGATTTGTTTTAGATTCAGAAACAAAACTTTCTTTCTTCAACTGCTCTTCAGTTAAGAAACATCACCTGAGAAACCAAGATCAGACATCCCAAGAGTCGCAAGATATGAATACATGCAAAATTTACGCTGCTATATCCGTTGACAGTATCCTCAAATTGGACCTTGTATCATGTACTAAGATGTTTGACGTCAGTGCCGCTATCAGTATAACGGGACTTACATATAATCAACTCGGTTTGAGTTGGCCTAAACCAAATTGTGCAGCCTGTGAAGCAGAAGGGAAGAATTGTAGATGGAGCAGCAACGGCGTAAAAGGTGAAGTTGAATGTTTTGAGTGCAACAAAAAACTAAAGACGAATCAAATTCCAAAATCGGTTATTTATGCTAGTGCAGGTTCAATTATATTGGGTTTAATCACCGTTGTATTTATTAAGATTTATTTGTATTTTAGAGAGAAAGAAGAAGATCAAGTTAGAATTGATAAGTTTTTAGAAGATTATAGAGCACAAAAGCCTGCTAGATTTTCATATTCCGATATAAAAAGAATCACAGGCGGATTTAAGGAGAAGATAGGAGAAGGAGCTCACGGAGTTGTGTTTAAAGGAAAACTCTCTAGTGAGATTCTGGTGGCTGTGAAAATTCTCAATAATTCACCAGGAGAAGGAAAAGAGTTCATCACTGAAATGGAAATTATGGGAAAAATCCACCACATCAACGTAGTTCGTTTGCTTGGCTTCTGCGCAGATGGAATTCACCGCGCTCTTGTGTACAATTTTTTTCCAAAAGGCTCGTTACAAAGTTTCATATTTTCACCTGAAGAAAAGGACCATTTCTTGGGGTGGGAAAAGGTGCAACAAATTAGTCTTGGTATAGCAAAAGGAGTTGAATATCTTCACGAGGGTTGTAACCATCCAATTCTTCACTTTGACATCAACCCTCACAATGTTTTGTTAGATGACACTTTCACTCCAAAAATTTCAGATTTCGGTCTTGCCAAATTATGTTCCAAGAATATTAGTATGGTGTCCATGACAGCTGCTAGGGGAACTTTGGGATACATGGCGCCCGAAGTTTTGTCCCGAAATTTTGGGAATGTTTCTCTTAAGTCTGATATTTATAGTTATGGGATGTTGTTGCTTGAAATGGTTGGTGGAAGAAAGAATGTGGACTCATCATCTGCACAAACTTTCCATGTATTATATCCGGATTGGATCCATAACTTATTAGAAGGAGACATACATATACGTATTGAAGATGAAAGTGATGTTGAAATTGCAAAGAAACTCGCAATTGTTGGACTTTGGTGCATCCAGTGGCAGCCAATGAACCGTCCATCCATAAAAACTGTCATACAAATGTTGGAAACAAGAGATTACAGTCAGTTAATTTGTCCTCCAAACTTGTTTCATTCAACCACTTGTATTACCACTGGTGAAAGCAGCTTAGCCAGACAAACTTTCCAAATGGAAATGATTCAGGAATAA 1872 0.3766 MITVIIICSPFLFLHKLIWMAMSHCFITLLILLLLINASSSHDHDECRESSFQLFDESSQHKCLHPQYCLYCTQNKKTIISLPTTSGPIQFSVDEIDYESNQISVSDPESCLPTKLLILKLNSSPFLPYRFVLDSETKLSFFNCSSVKKHHLRNQDQTSQESQDMNTCKIYAAISVDSILKLDLVSCTKMFDVSAAISITGLTYNQLGLSWPKPNCAACEAEGKNCRWSSNGVKGEVECFECNKKLKTNQIPKSVIYASAGSIILGLITVVFIKIYLYFREKEEDQVRIDKFLEDYRAQKPARFSYSDIKRITGGFKEKIGEGAHGVVFKGKLSSEILVAVKILNNSPGEGKEFITEMEIMGKIHHINVVRLLGFCADGIHRALVYNFFPKGSLQSFIFSPEEKDHFLGWEKVQQISLGIAKGVEYLHEGCNHPILHFDINPHNVLLDDTFTPKISDFGLAKLCSKNISMVSMTAARGTLGYMAPEVLSRNFGNVSLKSDIYSYGMLLLEMVGGRKNVDSSSAQTFHVLYPDWIHNLLEGDIHIRIEDESDVEIAKKLAIVGLWCIQWQPMNRPSIKTVIQMLETRDYSQLICPPNLFHSTTCITTGESSLARQTFQMEMIQE 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04792 623 PANTHER RUST RESISTANCE KINASE LR10-RELATED 284 596 IPR045874 GO:0004672
Vivi4g04792 623 FunFam PR5-like receptor kinase 389 593 - -
Vivi4g04792 623 Gene3D Phosphorylase Kinase; domain 1 288 388 - -
Vivi4g04792 623 Pfam Protein kinase domain 317 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04792 623 FunFam S-receptor-like serine/threonine-protein kinase 282 388 - -
Vivi4g04792 623 SUPERFAMILY Protein kinase-like (PK-like) 297 587 IPR011009 -
Vivi4g04792 623 Gene3D Transferase(Phosphotransferase) domain 1 389 592 - -
Vivi4g04792 623 ProSiteProfiles Protein kinase domain profile. 314 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04792 623 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04792 Vivi-Chr4 177271592 177273634 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04792 253 614 Receptor kinase-like Gene Family AT4G18250 40.591 1.56e-89 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04792 Pkinase 5.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04792 - - gmx:100811907 777.319