Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04790 ATGTGGTGGGCGAGAGTGATTTTGTTACTGTTGTTTCATCGAGGTAGCAGCAGCAGTACAACAAGAGCGCCTGAGAATACTTGTCCACCCTCATCTTGTGGCAAAATATCAAACATAAGTTACCCTTTTCGGTTGAAAGATGACCCAAAACACTGCGGAGACAGCAGGTATGAGCTATCATGTGAAAATAATGTAACAACTTCTAATTTGTTCGCTGCAAAATATCATGTGCAGTCCATCAACTACAATAACATCACAATCAGACTTGTTGATCCGAGAGTTCAACAAGATACCTGCTCTTCCCTTCCTCTCTATTTCTTGTCTCAATCTGATTTCTGTGAAACTTATCAGGACCGCCAATACTGCACGGATCCATACCAAGCCTCGTTATTTCGTGATGGCAGCCTTCTTTTTGAGCATATAGTTTACTTGAATTGTAGCCATCAAGTGACAAACAATCCTAAATATGTTGATACAACTTCCTGCCTCAATTGGAACTCCAACAAAGGCTATTATATTTATGCCATGGCCGGTGATTTAATCGCTCAAGATTTTCAAGTTGGTTGTCATGTAATATTGGTTACTCCCACTTCTTGGCTGAGTTTGCAAAGAAATCATCAACTACTTTCCTATGTTGATATGCACAAGGCCTTAGTCTATGGATTTGAGATTTCTTGGTTGGATCTTGCCTGTAATAATAGCTGCGGAGAATCAAATTATTGTTCCTTCAACGCTACCTCCGACAAACTTCAATGCTATGCCGATGTCGACTGCAGTAATATCCGATGGGAATGGATGAATAATTGTGGAATATGGCCCCAGCTGCGTTTATTCGTTAAAGATTCTATCGTATATATCTGGAAAGTATTGCTTGAAACTATAAAAGCACCCTTCAACCGACATCCTTTTATTTCCAACATGTTAAGTGGCGAGTATCCCTTAAGAGTTTTGATAGGACAATATGCTCTAACGTCGTTTTTAGTGGCTAGATTTCTCTTTGGGATGACATTATTTATTGCTTTGTTGATATACAAACGGAGGAAAAGACATTTGTCAATGTTTGAATATATCGAAGTATATCTACAGCAACAAAACAACCTCAATCCCATCGGATATTCATACAAAGAAATTAAGAAAATGGTTAGAGGTTTCAAAGACAAGTTAGGTGAAGGAGGCTTTGGCACTGTGTTTAAAGGAAATCTTCGTAGTGGACCTTGTGTGGCAATCAAGATGTTGCGTGAGTCTAAAGGTAATGGACAAGACTTTATTAGTGAAGTAGCAACCATCGGAAGGATACATCATTTGAATGTGGTGCAATTAATTGGATTTTGTGCGGAGGGATCAAAACGTGCTCTTGTTTACGATTTCATGCCTAATGGATCTCTTGATAAATTTATTTTCTCTAAAGAAGGGAGTAAAAATATAAGCTATAGCCAAATTTTTGACATAGCAGTTGGAGTAGCTCGTGGAATTGCTTATCTCCATCATGGATGTGAAATGAAGATTTTGCATTTTGATATTAAGCCTCACAACATTCTTCTTGATGAGAACTTCATCCCAAAAGTCTCTGACTTTGGATTGGCTAAGTTATATCCGGCAGAGAATAGCATCATCACAATGACTGCAGCGAGAGGAACAATTGGATATATGGCTCCAGAATTGTTCTACAAAAATATTGGAGGAGTGTCTTATAAGGCCGATGTTTATAGCTTTGGGATGCTTTTGATGGAAATGGCAAGTAAAAGAAAAAACCTAAATGTCCATGCAGAACATTCCAGCCAACTTTACTTTCCTTTATGGATTTATGATCAAGTTGAAAAAGAGCAAGACATAGAAATGGAAGATACCACTGAAGAGGAAAAGAAAATGATAAAGAAGATGGTCATAGTCGCACTCTGGTGCATACAATTGAAACCTGATGATCTTCCTTCAATGAACAAAGTCGTGGAAATGCTCGAAGGAGATGTTGAAAGTCTTAACATGCCTCCAAAGCCACTTCTTTATCCCAATGAAACCATTGAAAACAATCAAAGAAGCAGCTTGGACCAAACGATGTCAAGTGGTTACACTAGTGGTTCTTATGATTCTGTGGAAATAGAAGCTAATTCTCTAATAGAGAACATTTCATGA 2130 0.3822 MWWARVILLLLFHRGSSSSTTRAPENTCPPSSCGKISNISYPFRLKDDPKHCGDSRYELSCENNVTTSNLFAAKYHVQSINYNNITIRLVDPRVQQDTCSSLPLYFLSQSDFCETYQDRQYCTDPYQASLFRDGSLLFEHIVYLNCSHQVTNNPKYVDTTSCLNWNSNKGYYIYAMAGDLIAQDFQVGCHVILVTPTSWLSLQRNHQLLSYVDMHKALVYGFEISWLDLACNNSCGESNYCSFNATSDKLQCYADVDCSNIRWEWMNNCGIWPQLRLFVKDSIVYIWKVLLETIKAPFNRHPFISNMLSGEYPLRVLIGQYALTSFLVARFLFGMTLFIALLIYKRRKRHLSMFEYIEVYLQQQNNLNPIGYSYKEIKKMVRGFKDKLGEGGFGTVFKGNLRSGPCVAIKMLRESKGNGQDFISEVATIGRIHHLNVVQLIGFCAEGSKRALVYDFMPNGSLDKFIFSKEGSKNISYSQIFDIAVGVARGIAYLHHGCEMKILHFDIKPHNILLDENFIPKVSDFGLAKLYPAENSIITMTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASKRKNLNVHAEHSSQLYFPLWIYDQVEKEQDIEMEDTTEEEKKMIKKMVIVALWCIQLKPDDLPSMNKVVEMLEGDVESLNMPPKPLLYPNETIENNQRSSLDQTMSSGYTSGSYDSVEIEANSLIENIS 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04790 709 Gene3D Transferase(Phosphotransferase) domain 1 457 661 - -
Vivi4g04790 709 PANTHER RUST RESISTANCE KINASE LR10-RELATED 356 675 IPR045874 GO:0004672
Vivi4g04790 709 FunFam serine/threonine-protein kinase PBS1-like 355 456 - -
Vivi4g04790 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672|GO:0006468
Vivi4g04790 709 SMART serkin_6 382 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04790 709 ProSitePatterns Protein kinases ATP-binding region signature. 388 410 IPR017441 GO:0005524
Vivi4g04790 709 FunFam PR5-like receptor kinase 457 664 - -
Vivi4g04790 709 ProSiteProfiles Protein kinase domain profile. 382 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04790 709 Pfam Protein tyrosine and serine/threonine kinase 384 652 IPR001245 GO:0004672|GO:0006468
Vivi4g04790 709 Pfam Wall-associated receptor kinase galacturonan-binding 28 91 IPR025287 GO:0030247
Vivi4g04790 709 SUPERFAMILY Protein kinase-like (PK-like) 363 653 IPR011009 -
Vivi4g04790 709 Gene3D Phosphorylase Kinase; domain 1 358 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04790 Vivi-Chr4 177253155 177271062 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04790 6 668 Receptor kinase-like Gene Family AT5G38260 33.929 5.85e-114 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04790 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04790 - - tpra:123893257 923.694