Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04789 ATGGCTTTGCATAACATTTGGATGACAGGAGCAGCACATGGTAGTTTGATGATGCTACTTCTGATGCTCATGCTTACTATCAATAATGGAAGCAGTATTGATGAGTGTAGAGAGATGTCTTGTGGACAAGACGAACCCATAATTCGATTTCCCTTCCAGCTCGTTGATGAATCATCGCAAGATCAATGTCTTTATCCTGAATTCTGTCTATATTGTACTCATTACAAGGAAACCATGCTTTCACTCCCTACCACTTCAGGTCCAATCAAATTCCTTGTCGATGTCATCGACTACGAATCAAACCAAATTTCAGTTCGGGACCCGGAAAATTGCATGCTCAAAATAATTCTGAAACTAAACAATTCACCATTTCTACCTTACCGATTTTATCCAGTATCAGAAACAGAAACAACAGAAGTTTCTTTCTTCAATTGCTCTTCAGCAAGGAAACAGCACTTGAGAAACTATAACCAGATATATCCTGAATCACAAAATATGATCACCTGTCCAATTTACGTTTCTGAGTCTTCCGAAAGTGTCCTCAAATTGGACCTTACATCATGTATCAAGATACCCAACTTGTCAATCCCGCAGTCATACCTGCTCGATAATTTTCTTTACTTGGGTTGGCTCGAACAAAACTGTACAGAGTGCGAAGTGAAGGGAATGAGATGCAAATGGAAGAACAACGGCACCAAAGGCGAAACTGAATGTTTTGATTGCAAAAGGAAACGTAAAACAATTCAAATTCCAAGATCTCTTGTATACTCTGCTACAGGTTCAATTCTTTTGGGGCTGATTCTCATTGCATTGTTTAAAATATTTCTCTATTTTAAGAAGAAAGAAGAGGATCAAATTAGAGTTGATAAATTTTTAGAGGATTATAGAGCACAAAAGCCGGCTAGATTTTCCTATGCTGATTTAAAAAGAATTACCAATGGGTTTAAAGAAAAACTTGGACAAGGAGCTCACGGAACTGTGTTTAAAGGAAAACTTTCAACTGAGATTCTTGTGGCTGTGAAGATACTCAACGGTACTCAAGGAGAAGGAAAAGAGTTCATCAATGAAGTAGGAATTATGGGCAAAATCCACCACATCAACGTAGTTCGTTTGATTGGCTTTTGCGCCGATGGAATCCACCGTGCTCTGGTTTACAATTTGTTTTCAAATGGTTCGCTACAAAGTTTCATATTTTCAACGGAAAACAAAGATCATTTCATGGGATGGGAGAAACTGCACCAAATTGGTATTGGCATTGCCAAAGGAATTGAGTATCTTCATCAGGGTTGTAGTCATCCAATCATTCACTTTGACATCAATCCTCACAATGTTTTACTAGATGACTCTTTTACTCCAAAGATTTCGGATTTTGGTCTCGCAAAGTTATGTTCCAAGAATGTTAGTGCTGTGTCCATGACAGCGGCTAAGGGAACCTTTGGATACATGGCGCCAGAAGTTCTGTCAAGAAATTTTGGGAATGTGTCTCTAAAATCAGATATTTACAGTTATGGAATGTTGTTGTTAGAAATGGTTGGAGGAAGGAAGAATATAGATACATCATCTGCCGAAAATGTCGATGTGTTGTACCCAGAATGGATACACAATTTATTGGAAGGAGATGTACATATTGATATTGAGAATGAAGTTGATTTTAAAATTGCAAAGAAACTTGAAATTGTTGGACTTTGGTGCATTCAATGGCAACCAATAAATCGTCCATCAATAAAAGCTGTTGTGCAAATGTTGGAAACAAGAGATGATAGGCAGCTAATTGTACCTCCTAATCCTTTCCAATCAACGACTTCCATGACCACTAATGAAAAAAGCACTTTGGCAAGAAGAACTTTTCAAATGGAAATAATTCAGGAATAA 1872 0.3766 MALHNIWMTGAAHGSLMMLLLMLMLTINNGSSIDECREMSCGQDEPIIRFPFQLVDESSQDQCLYPEFCLYCTHYKETMLSLPTTSGPIKFLVDVIDYESNQISVRDPENCMLKIILKLNNSPFLPYRFYPVSETETTEVSFFNCSSARKQHLRNYNQIYPESQNMITCPIYVSESSESVLKLDLTSCIKIPNLSIPQSYLLDNFLYLGWLEQNCTECEVKGMRCKWKNNGTKGETECFDCKRKRKTIQIPRSLVYSATGSILLGLILIALFKIFLYFKKKEEDQIRVDKFLEDYRAQKPARFSYADLKRITNGFKEKLGQGAHGTVFKGKLSTEILVAVKILNGTQGEGKEFINEVGIMGKIHHINVVRLIGFCADGIHRALVYNLFSNGSLQSFIFSTENKDHFMGWEKLHQIGIGIAKGIEYLHQGCSHPIIHFDINPHNVLLDDSFTPKISDFGLAKLCSKNVSAVSMTAAKGTFGYMAPEVLSRNFGNVSLKSDIYSYGMLLLEMVGGRKNIDTSSAENVDVLYPEWIHNLLEGDVHIDIENEVDFKIAKKLEIVGLWCIQWQPINRPSIKAVVQMLETRDDRQLIVPPNPFQSTTSMTTNEKSTLARRTFQMEIIQE 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04789 623 PANTHER RUST RESISTANCE KINASE LR10-RELATED 285 602 IPR045874 GO:0004672
Vivi4g04789 623 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Vivi4g04789 623 FunFam PR5-like receptor kinase 388 593 - -
Vivi4g04789 623 SUPERFAMILY Protein kinase-like (PK-like) 296 584 IPR011009 -
Vivi4g04789 623 ProSiteProfiles Protein kinase domain profile. 313 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04789 623 Gene3D Phosphorylase Kinase; domain 1 287 387 - -
Vivi4g04789 623 Pfam Protein kinase domain 316 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04789 623 Pfam Wall-associated receptor kinase galacturonan-binding 36 107 IPR025287 GO:0030247
Vivi4g04789 623 FunFam serine/threonine-protein kinase PBS1-like 280 387 - -
Vivi4g04789 623 Gene3D Transferase(Phosphotransferase) domain 1 388 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04789 Vivi-Chr4 177249707 177251807 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04789 1 612 Receptor kinase-like Gene Family AT1G66910 32.537 5.88e-94 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04789 Pkinase 3.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04789 - - gmx:100811907 795.038