Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04781 ATGTCAGGAGCAGCACATAGTAGTTTGATGATGCTACTTCTACTGCTCATGCTCGCCGATAGCAGCAGCAGTACTGATGAGTGCAGAGAACCAACTTGTGGACCTAACCAACCGACTATTCAATTTCCTTTCCAACTTGTTGAAGAATCATCACAAGATCAATGTGTTAATCCTGAGTTTTGTCTATATTGTACTCAAAACAAGCAAACCATGCTTTTACTCCATACCACTTCCGGGCCAATTCAGTTCCCTGTTCTTGAAATTGATTATGAATTCAACTCCATTTTAATTTCGGACCCAGACAACTGCTTTCCAGAAAAGTTTCTGAAACTTAAACTTTACAATTCCTCATTTCTATCATACAAAACTTATTCATACTCAAGTACAATAGTTTTTTTCAATTGCTCTTCAGTTAAGAAGCGTTACTTGAGAAACCGAGATTCACAAGATATGATCAAATGTCCAATTTACATTTCTGAATCCTTCGACAGTGTCCTCGCACTGGACCTTGCAACGTGTATCAAGATATTCGAATTCAACACGTCGTCGATCATGGCATTTGACATGACGTTTGATCGGCTCAGTTTGAGTTGGCCCAAACAAACTTGTACGGAGTGCAAAGCGAAGGGACTGAGATGCAAATGGAAGAACAACGGCACCAAAGGCGAAACTGAATGTGTTGATTGCAAAAGCAAACGTAAAACAATTCAAATTCCAAGATCTCTTATATACACCGCTACAGGTTCAATTCTTTTTGGGCTGTTTCTCATTGCACTGTTTAAGATATGTCTCTATTTTAAGAAGAAAGAAGAGGATCAAATTAGAGTTGACAAGTTCTTAGAGGATTACAGAGCACAAAAGCCAGCTAGATTTTCCTATGCTGATATAAAAAGAATTACGAACGGATTTAAGGAAAAACTCGGAGAAGGTGCCCACGGAACTGTGTTTAAAGGAAAACTCTCAACTGAGATTCTTGTGGCAGTGAAAATGCTCAATGGTACTCAAGGAGAAGGAAAAGAATTCATCAATGAAGTAGGAATTATGGGCAAAATCCACCACATCAACGTAGTCCGTTTGATTGGCTTTTGCGCTGATGGAATCCACCGTGCTCTTGTTTACAATTTGTTTGCAAATGGTTCACTACAAAGTTTCATATTTGCACCGGATAACAAAGATCATTTCATGGGATGGGAGAAGCTGCAACAAATAGGTCTTGGGATAGCCAAAGGTATTGAGTATCTTCATCAAGGTTGTAACCATCCAATCATTCACTTTGACATCAACCCTCACAATGTTTTACTAGATGACTCTTTTACTCCAAAGATTTCGGATTTTGGTCTCGCAAAATTATGTTCCAAGAATGTTAGTGCCGTGTCCATGACAGCGGCTAAAGGAACCTTTGGATACATGGCGCCTGAAGTTCTGTCAAGAAATTTTGGAAATGTGTCTCTAAAATCAGATATTTACAGTTACGGAATGTTGTTGTTAGAAATGGTTGGAGGAAGGAAGAATATAGATACGTCATCTGCGGAAAATTTCAATGTGTTGTACCCAGAATGGATACACAATTTATTGGAAGGAGATGTACATATTGATATTGGGAATGAAGTTGATTTTAAAATTGCAAAGAAACTTGCAATTGTTGGACTTTGGTGCATTCAATGGCAACCAATAAATCGTCCATCAATAAAAGCTGTTGTACAAATGTTGGAAACAAGCGATGATAGCCAGCTAATTGTACCTCCTAATCCTTTCCAGTCTACGACCTCAATGACCACTAATGAAAAAAGCACTTTGGCGAGAAGAACTTTTCAAATGGAAATAATTCAGGAATAA 1836 0.3834 MSGAAHSSLMMLLLLLMLADSSSSTDECREPTCGPNQPTIQFPFQLVEESSQDQCVNPEFCLYCTQNKQTMLLLHTTSGPIQFPVLEIDYEFNSILISDPDNCFPEKFLKLKLYNSSFLSYKTYSYSSTIVFFNCSSVKKRYLRNRDSQDMIKCPIYISESFDSVLALDLATCIKIFEFNTSSIMAFDMTFDRLSLSWPKQTCTECKAKGLRCKWKNNGTKGETECVDCKSKRKTIQIPRSLIYTATGSILFGLFLIALFKICLYFKKKEEDQIRVDKFLEDYRAQKPARFSYADIKRITNGFKEKLGEGAHGTVFKGKLSTEILVAVKMLNGTQGEGKEFINEVGIMGKIHHINVVRLIGFCADGIHRALVYNLFANGSLQSFIFAPDNKDHFMGWEKLQQIGLGIAKGIEYLHQGCNHPIIHFDINPHNVLLDDSFTPKISDFGLAKLCSKNVSAVSMTAAKGTFGYMAPEVLSRNFGNVSLKSDIYSYGMLLLEMVGGRKNIDTSSAENFNVLYPEWIHNLLEGDVHIDIGNEVDFKIAKKLAIVGLWCIQWQPINRPSIKAVVQMLETSDDSQLIVPPNPFQSTTSMTTNEKSTLARRTFQMEIIQE 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04781 611 Gene3D Transferase(Phosphotransferase) domain 1 376 581 - -
Vivi4g04781 611 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Vivi4g04781 611 PANTHER RUST RESISTANCE KINASE LR10-RELATED 275 590 IPR045874 GO:0004672
Vivi4g04781 611 FunFam PR5-like receptor kinase 376 581 - -
Vivi4g04781 611 ProSiteProfiles Protein kinase domain profile. 301 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04781 611 SUPERFAMILY Protein kinase-like (PK-like) 284 571 IPR011009 -
Vivi4g04781 611 Pfam Wall-associated receptor kinase galacturonan-binding 28 99 IPR025287 GO:0030247
Vivi4g04781 611 Pfam Protein kinase domain 304 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04781 611 FunFam serine/threonine-protein kinase PBS1-like 268 375 - -
Vivi4g04781 611 Gene3D Phosphorylase Kinase; domain 1 275 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04781 Vivi-Chr4 177182812 177185086 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04781 266 584 Receptor kinase-like Gene Family AT1G66980 48.012 1.80e-93 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04781 Pkinase 6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04781 - - gmx:100790964 811.986