Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04780 ATGCTATCGCTTCTGCGAAAATTTCTGGGGAGGAGATACGAGCAGTCTTTGTGGGATATGGCCCCAGCTGAGTTTCTACACCAAAGATTTTATCAAAGCTATCTGGATAGGTATTGTGCTACAGGTTTATTTGAAATAATAAAAGGACGAAACGAAAGATATGAAGGTTTTTCCGAGTATACTGCAGGACTGTCCACAGGACACTATATTCTTCCATCATTTTTAGTGGCTAGATTTCTCTTTGGGATGACTTTATTTATTGCTTTCTTGATATACAAATGGAAGAAAAGGCATTTGTCAATGTTTGAATATATTGAAGTATATCTACAGCAACAAAACAACCTCAATCCCATAGGATATTCATACAAAGAAATTAAGAAAATGGTTAGAGGTTTCAAAGACAAGTTAGGTGAAGGAGGTTTTGGCACTGTGTTTAAGGGAAATCTTCGTAGTGGACCTTGTGTGGCAATCAAGATGTTGCGTGAGTCTAAAGGTAATGGACATGACTTTATTAGTGAAGTAGCAACCATCGGAAGGATACATCATTTGAATGTGGTGCAATTAATTGGATTTTGTGCAGAGGGATCAAAACGTGCTCTTGTTTACGATTTCATGTCTAATGGATCTCTTGATAAATTTATTTTCTCTAAAGAAGGGAGTAAAAATATAAGCTATAGTCAAATTTTTGACATATCAGTTGGAGTAGCTCGTGGGATTGCTTATCTCCACCATGGATGTGAAATGAAGATTTTGCATTTTGATATCAAACCTCACAACATTCTTCTTGATGAGAACTTCATCCCAAAAGTCTCTGACTTTGGATTGGCTAAGTTATATCCGGCAGAGAATAGCATCATCACAATGACAGCAGCTAGAGGAACAATCGGATATATGGCTCCAGAATTGTTCTACAAAAATATTGGAGGAGTGTCTTATAAGGCCGATGTTTACAGCTTTGGGATGCTTTTGATGGAAATGGCAAGTAAAAGAAAAAACCTAAATGTCCATGCAGAACATTCCAGCCAACTTTACTTTCCTTTATGGATTTATGATCAAGTTGAAAAAGAGCAAGACATAGAAATGGAAGATACCACTGAAGAGGAAAAGAAAATGATAAAGAAGATGGTCATAGTTGCATTCTGGTGCATACAATTGAAACCAGATGATCGTCCTTCCATGAACAAAGTCGTGGAGATGCTCGAAGGAGATGTTAAAAGTCTTAACATGCCTCCAAAACCACTTCTTTATCCCAATGAAACCATTGAAAACGATCAAAGAAGCAACTTGGACCAAACAATGTCAAGTGATTACACAAGTAGTTCTTATGATGATGATGTGGAAATAGAAGCTGTTAATGTGTAA 1362 0.3686 MLSLLRKFLGRRYEQSLWDMAPAEFLHQRFYQSYLDRYCATGLFEIIKGRNERYEGFSEYTAGLSTGHYILPSFLVARFLFGMTLFIAFLIYKWKKRHLSMFEYIEVYLQQQNNLNPIGYSYKEIKKMVRGFKDKLGEGGFGTVFKGNLRSGPCVAIKMLRESKGNGHDFISEVATIGRIHHLNVVQLIGFCAEGSKRALVYDFMSNGSLDKFIFSKEGSKNISYSQIFDISVGVARGIAYLHHGCEMKILHFDIKPHNILLDENFIPKVSDFGLAKLYPAENSIITMTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASKRKNLNVHAEHSSQLYFPLWIYDQVEKEQDIEMEDTTEEEKKMIKKMVIVAFWCIQLKPDDRPSMNKVVEMLEGDVKSLNMPPKPLLYPNETIENDQRSNLDQTMSSDYTSSSYDDDVEIEAVNV 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04780 453 FunFam PR5-like receptor kinase 205 412 - -
Vivi4g04780 453 Pfam Protein tyrosine and serine/threonine kinase 132 400 IPR001245 GO:0004672|GO:0006468
Vivi4g04780 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Vivi4g04780 453 MobiDBLite consensus disorder prediction 416 441 - -
Vivi4g04780 453 FunFam serine/threonine-protein kinase PBS1-like 102 204 - -
Vivi4g04780 453 SUPERFAMILY Protein kinase-like (PK-like) 111 401 IPR011009 -
Vivi4g04780 453 SMART serkin_6 130 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04780 453 MobiDBLite consensus disorder prediction 420 441 - -
Vivi4g04780 453 Gene3D Transferase(Phosphotransferase) domain 1 205 409 - -
Vivi4g04780 453 PANTHER RUST RESISTANCE KINASE LR10-RELATED 105 423 IPR045874 GO:0004672
Vivi4g04780 453 Gene3D Phosphorylase Kinase; domain 1 106 204 - -
Vivi4g04780 453 ProSiteProfiles Protein kinase domain profile. 130 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04780 453 ProSitePatterns Protein kinases ATP-binding region signature. 136 158 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04780 Vivi-Chr4 177171429 177181853 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04780 120 447 Receptor kinase-like Gene Family AT4G18250 50.581 7.24e-111 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04780 PK_Tyr_Ser-Thr 2.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04780 - - vvo:131596098 609.757