Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04779 ATGGCCGGTGATTTAATTGCTCAAGATTTTCAAGTTGGTTGTCATGTCAAGTTACTGGCTCCAACTTCTTGGCCCGGTTTGCAAAGAAACCATCAAATACTTTCCTATGATGTCATGCACAAGGCCTTGCTCTATGGATTTCAGATTTCTTGGTTGGATCTTGCTTGTAAGAATCATTGTGGATATTCAAAGTACTGTTCCTTCAACGCTACCACCGAGGAATTTCAATGCTATCGCTTCTGCGAAAATTTCTGGGGAGGAGATACGAGCAGTCTTTGTGGGATATGGCCCCAGCTGAGTTTCTACACCAAAGATTTTATCAAAGCTATCTGGATAGGTTTATTTGAAATAATAAAAGGACGAAACGAAAGATATGAAGGTTTTTCCGAGTATACTGCAGGACTGTCCACAGGACACTATATTCTTCCATCATTTTTAGTGGCTAGATTTCTCTTTGGGATGACTTTATTTATTGCTTTCTTGATATACAAATGGAAGAAAAGGCATTTGTCAATGTTTGAATATATTGAAGTATATCTACAGCAACAAAACAACCTCAATCCCATAGGATATTCATACAAAGAAATTAAGAAAATGGTTAGAGGTTTCAAAGACAAGTTAGGTGAAGGAGGTTTTGGCACTGTGTTTAAGGGAAATCTTCGTAGTGGACCTTGTGTGGCAATCAAGATGTTGCGTGAGTCTAAAGGTAATGGACATGACTTTATTAGTGAAGTAGCAACCATCGGAAGGATACATCATTTGAATGTGGTGCAATTAATTGGATTTTGTGCAGAGGGATCAAAACGTGCTCTTGTTTACGATTTCATGTCTAATGGATCTCTTGATAAATTTATTTTCTCTAAAGAAGGGAGTAAAAATATAAGCTATAGTCAAATTTTTGACATATCAGTTGGAGTAGCTCGTGGGATTGCTTATCTCCACCATGGATGTGAAATGAAGATTTTGCATTTTGATATCAAACCTCACAACATTCTTCTTGATGAGAACTTCATCCCAAAAGTCTCTGACTTTGGATTGGCTAAGTTATATCCGGCAGAGAATAGCATCATCACAATGACAGCAGCTAGAGGAACAATCGGATATATGGCTCCAGAATTGTTCTACAAAAATATTGGAGGAGTGTCTTATAAGGCCGATGTTTACAGCTTTGGGATGCTTTTGATGGAAATGGCAAGTAAAAGAAAAAACCTAAATGTCCATGCAGAACATTCCAGCCAACTTTACTTTCCTTTATGGATTTATGATCAAGTTGAAAAAGAGCAAGACATAGAAATGGAAGATACCACTGAAGAGGAAAAGAAAATGATAAAGAAGATGGTCATAGTTGCATTCTGGTGCATACAATTGAAACCAGATGATCGTCCTTCCATGAACAAAGTCGTGGAGATGCTCGAAGGAGATGTTAAAAGTCTTAACATGCCTCCAAAACCACTTCTTTATCCCAATGAAACCATTGAAAACGATCAAAGAAGCAACTTGGACCAAACAATGTCAAGTGATTACACAAGTAGTTCTTATGATGATGATGTGGAAATAGAAGCTGTTAATGTGTAA 1575 0.374 MAGDLIAQDFQVGCHVKLLAPTSWPGLQRNHQILSYDVMHKALLYGFQISWLDLACKNHCGYSKYCSFNATTEEFQCYRFCENFWGGDTSSLCGIWPQLSFYTKDFIKAIWIGLFEIIKGRNERYEGFSEYTAGLSTGHYILPSFLVARFLFGMTLFIAFLIYKWKKRHLSMFEYIEVYLQQQNNLNPIGYSYKEIKKMVRGFKDKLGEGGFGTVFKGNLRSGPCVAIKMLRESKGNGHDFISEVATIGRIHHLNVVQLIGFCAEGSKRALVYDFMSNGSLDKFIFSKEGSKNISYSQIFDISVGVARGIAYLHHGCEMKILHFDIKPHNILLDENFIPKVSDFGLAKLYPAENSIITMTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASKRKNLNVHAEHSSQLYFPLWIYDQVEKEQDIEMEDTTEEEKKMIKKMVIVAFWCIQLKPDDRPSMNKVVEMLEGDVKSLNMPPKPLLYPNETIENDQRSNLDQTMSSDYTSSSYDDDVEIEAVNV 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04779 524 Pfam Protein tyrosine and serine/threonine kinase 203 471 IPR001245 GO:0004672|GO:0006468
Vivi4g04779 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 321 333 IPR008271 GO:0004672|GO:0006468
Vivi4g04779 524 PANTHER RUST RESISTANCE KINASE LR10-RELATED 175 494 IPR045874 GO:0004672
Vivi4g04779 524 ProSiteProfiles Protein kinase domain profile. 201 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04779 524 Gene3D Phosphorylase Kinase; domain 1 177 275 - -
Vivi4g04779 524 FunFam PR5-like receptor kinase 276 483 - -
Vivi4g04779 524 MobiDBLite consensus disorder prediction 487 512 - -
Vivi4g04779 524 FunFam serine/threonine-protein kinase PBS1-like 174 275 - -
Vivi4g04779 524 Gene3D Transferase(Phosphotransferase) domain 1 276 480 - -
Vivi4g04779 524 SUPERFAMILY Protein kinase-like (PK-like) 182 472 IPR011009 -
Vivi4g04779 524 ProSitePatterns Protein kinases ATP-binding region signature. 207 229 IPR017441 GO:0005524
Vivi4g04779 524 SMART serkin_6 201 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04779 524 MobiDBLite consensus disorder prediction 491 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04779 Vivi-Chr4 177171429 177182510 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04779 191 518 Receptor kinase-like Gene Family AT4G18250 50.581 1.50e-109 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04779 PK_Tyr_Ser-Thr 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04779 - - tpra:123893257 740.725