Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04778 ATGTTACTGAAAACAATATTAGCATTGCTACTGCTGCAGCTAATAAAACGTGGAAATGGTTTGAATAACAATAACTCTTCCATTCGATGCCCCTTTCGTCTATCTTGTTCTCCTAACAAGAATCAAATCCTTGAATTTCCTTCACTACCAGAAAAATTCACTGTCAGATACATAGATTGCGAATTGAAAGAGTTATCTCTATATCACCCACAAAACTGTTTTTCTAGTCTCCTTTTAACTCACAATTTGTCGTTATTTTATCCTTTCCGTCTTCAATCAGATTTTCGTTTTAGAAGCTACAATGTTACTTTCTTTAATTGCTCTTCAGTTCGACAACACCGTCTCAAAAGCTGGGACGATACAAACCCTGGTGCCCAAGATATGTTGTCTTGTCCGATTTATGTTGCTGATTCCACTGAAAGTGTTGTCGATTTAGACTTATTACGCTGCACAAGAATACTTGATAAAGTTTTTCCAATAGATGCATTTAATATAAGGCTAAACTATCTCAGATTGACTTGGTCTGAAACAAATTTTGACAGTCGATGTTTAGAGTATGAGCTACGCAACAAATCGAAGAATCACACACCTATTATTTTAGAAACAACAGGAGCAATTGTTGGTTCAACTATGCTGGTTTTTTTTATTGGTGTTTTTTTCCGCGTATACTTCTATTTTAGGATGAAAGGTGAAGATCAAACTAGACTTGAAAACTTTTTGAAGGATTATGAAGCTTCAAAGCCAACAAGATTCTCTTACGCCGATATCAAGAGAATTACAGATCAATTCAAGGAAAAGCTCGGCGAAGGAGCTCATGGAACTGTCTATAAAGGTAAATTATCGAGCCAAATTATGGTTGCTGTGAAGATGCTGAATAATACAGAAGGAGACGGGAGAGAGTTCATTAATGAAGTTGGAACTATGGGAAAAATTCACCATGTTAACGTTGTTCGCTTGCTTGGCTTCTGTGCGGATGGATTTTATCGCGCTTTGGTTTATGACTTTTTCCCTAATGGTTCACTACAGAAATTCATATCTCCGCCCAACAAGGATGATTTCCTTGGTTGGGACTTATTGCAACAAATTGCTATAGGCATTGCCAATGGGATTGAGTATCTTCATCAGGGTTGTGATCATAGAATTCTTCACTTTGATATCAATCCTCATAATGTGTTGTTAGATGATAATTTCATTCCTAAAATATCAGACTTCGGTTTAGCTAAGTTGTGTTCCAAAAATCAAAGTACAGTCTCGATGACTGCAGCGAGAGGAACATTAGGCTATATGGCGCCTGAAGTTTTTTCTAGAAATTTTGGGAATGTCTCTTATAAATCTGATATATACAGCTACGGCATGTTGCTGTTGGAGATGGTTGGTGGAAGAAAGAATACTAATACAACCATAGGTGAAGAAAATTTCCAAGTTTTGTATCCAGATTGGATTCACGGTTTGCTCGAAGGGAGAGACATACATATTCCAATTGACGAAGAAGGAGATTTTAGAATTGCAAAGAAGCTAGCAATTGTAGGACTTTGGTGCATTCAGTGGCATTCTGCGGATCGTCCCTCTATGAAAACTGTCTTGCAGATGCTTCAAGGAGAGGGAGACAAGTTAAGAGTTCCTACCAATCCTTTCAATGCTCCATCTTCGGCTAATAGAACTGCAAATACTACTGCAGGATATTTAAATTTAGAACTTGATGTGATTCAAGAATTAGACTAG 1722 0.3722 MLLKTILALLLLQLIKRGNGLNNNNSSIRCPFRLSCSPNKNQILEFPSLPEKFTVRYIDCELKELSLYHPQNCFSSLLLTHNLSLFYPFRLQSDFRFRSYNVTFFNCSSVRQHRLKSWDDTNPGAQDMLSCPIYVADSTESVVDLDLLRCTRILDKVFPIDAFNIRLNYLRLTWSETNFDSRCLEYELRNKSKNHTPIILETTGAIVGSTMLVFFIGVFFRVYFYFRMKGEDQTRLENFLKDYEASKPTRFSYADIKRITDQFKEKLGEGAHGTVYKGKLSSQIMVAVKMLNNTEGDGREFINEVGTMGKIHHVNVVRLLGFCADGFYRALVYDFFPNGSLQKFISPPNKDDFLGWDLLQQIAIGIANGIEYLHQGCDHRILHFDINPHNVLLDDNFIPKISDFGLAKLCSKNQSTVSMTAARGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNTTIGEENFQVLYPDWIHGLLEGRDIHIPIDEEGDFRIAKKLAIVGLWCIQWHSADRPSMKTVLQMLQGEGDKLRVPTNPFNAPSSANRTANTTAGYLNLELDVIQELD 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04778 573 Pfam Protein tyrosine and serine/threonine kinase 263 467 IPR001245 GO:0004672|GO:0006468
Vivi4g04778 573 SUPERFAMILY Protein kinase-like (PK-like) 242 531 IPR011009 -
Vivi4g04778 573 Gene3D Transferase(Phosphotransferase) domain 1 336 542 - -
Vivi4g04778 573 ProSitePatterns Protein kinases ATP-binding region signature. 267 289 IPR017441 GO:0005524
Vivi4g04778 573 PANTHER RUST RESISTANCE KINASE LR10-RELATED 233 550 IPR045874 GO:0004672
Vivi4g04778 573 ProSiteProfiles Protein kinase domain profile. 261 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04778 573 Gene3D Phosphorylase Kinase; domain 1 235 335 - -
Vivi4g04778 573 FunFam PR5-like receptor kinase 336 543 - -
Vivi4g04778 573 FunFam serine/threonine-protein kinase PBS1-like 229 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04778 Vivi-Chr4 177169413 177171317 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04778 227 544 Receptor kinase-like Gene Family AT1G66910 49.691 2.50e-101 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04778 PK_Tyr_Ser-Thr 3.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04778 - - tpra:123893290 929.087