Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04769 ATGGACGGTGACCGAAAAATGGCCGTTCCTCATGTTGATGGGTCTGCTGATGGTGCTCAGAAACTTAAAGCAGCATTGCACGGGAGGACTACTGGTCCTACTAGGCGTTCTACAAAAGGGCAATGGACTCCTGAGGAGGACGAGACATTGCGGAAGGCTGTTGAACGTTTCCAAGGAAAAAATTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTACATAGGTGGCAGAAAGTGTTGAATCCCGAGCTTGTTAAAGGGCCATGGTCTAAAGAGGAAGATGAAGTGATGATTGAATTGGTGAACAAAATTGGGCCTAAAAAGTGGTCAACTATCGCACAACATTTACCTGGGCGTATCGGGAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTGCTATAAACAAAGAAGCATGGACACAGGAAGAGGAGTTGGCTCTAATACGAGCTCATCAAATTTATGGGAATAAATGGGCAGAATTAACGAAGTTTTTGCCTGGAAGGACAGACAATGCTATTAAAAACCACTGGAACAGTTCTGTCAAAAAGAAATTGGATTCTTACTTGGCATCGGGCTTACTTACTCAGCTGCAGTCTGCACCTCATGATGGAAATCCAAGTCAATCAATGGCTACAACATCTTCAAGGGTGCAATGTAATGCAGATGATAGCGTTCTTCAGGGGACTGAAGGAGATGAAGGTTTAGAGTGTAGCCATGAGTCAGCTAATGCTCTCCATTTTCCATCCACTAGAGAGATGACCAGTGTTGACTTGCAAACTGTTGGGGGAGAATGTAGTCTTGGGACGGATCATAGTCCAAGTCAAGCATCCTGTTCAGAGCCATATTACATATCAATTGATGACACTACTACATGCATCCCAGAAATTGCTCATCACGAAGCATGTTCTTCTGAATTCAATGAACAATTCTCTCATGAACCTGGGAATTCCATAAATGAGGATTGCCAGTATAATTTACATTCCTTACCCAATATTTCATCAATAGACTTAGGGAAGGACTCCTCCCAGTTGCAAAGAGATTATATGGAATCTACAGGTCCTAGTGGAATACGAGACTTGGCGAATGCTTCAATGCCCATGGAAACTACAGCTACAGATGCTGCTAAACCAGATCATATGCTGATATCTGATGATGAATGTTGCAGAGCCCTATTTCCAGAGGCAAATAATGATATATGTTTTATCCCAGGAGATTATATTAAAGATGTTGATACTGTTGAATTTTCTGGTCAACCCCCATTTGTTTGTCAATCATGTCATTTTCAGATTTCCGAAAATTGTGAAACCTCAACTCTGCCATTAACTTGCCCTCAGTGTTCTAATAATTTTAAAGGGATGACATCCTCCCAATCTACTCGACCTGTACATTCCGCTGAGCCTGAGGATCAGCAGTTTGTTTCCAGTGCACCTGATAACTTCACTTATGCCATTGACATGCCCATTTCTCCTTGTATTGATGCTACAGATGGTGCAGTAATGCGAGATGTTAAGCAAACCTGTTATCCAACAGATGAAAGGCCAAACATGCACACAGAAAAGGAGGGCAAGGGAGCACTGTGTTATGAACCTCCTCGTTTTCCGAGCATGGATATTCCTTTCTTGAGCTGTGATCTTGTACAATCTGGGGGTGATATGCAGCAAGAATTTAGTCCTCTGGGTATCCGCCAGTTTATGATGTCGTCTATGAACTGTCTGACTCCATCAAGGTTGTGGGACTCCCCTTCTCGTGATGATAGTCCAGAAGCATTATTGAAAAGTGCAGCTAAAACTTTTACGGGTACACCATCAATATTAAAAAAACGACGCCGAGATTTGTTATCCCCACTTTCCGATAAAAGAATTGGCAAGAAACTTGAGACTGAGATGACATCCTCTTTGTCCAAAGCCTTTTCTAGTTTGGAAGCAGATATACTCTCTCCATCTTCATTGCAAAAGCAAAACTCTGAGGCTCCAGTTTTTGACGACGATAAAGAAAATTATGGACAAGCTGATAAAGGTAAACAAGTAGAGGAGATAATTAAATCTGCAGTTTTGGAAGAAAAGATGTCCCAAAGAGATGCTCTTGACAGTAATTCTCCTGGTAAGGTTAAGCAGCAACCTTTTGATGTTGATTCTAAAATGAAGATTGATGCTACTACTGCTGTTGAGATTGTGCAACAATCTTCTAGAGTTTTGTCTGAACATGATAGGAACGACCTTTCATTATATTCATCTGATGAAGTTGGTGTTAGTGACAGAGTTCTAGGTTCTAGTGTTATAATTCCCAGAAATATGAACAATAGGAGCTCGGAAATTGCTCCAAACCAGAGCATTCCTTCAAAACCATCTTCTGAGAGTCAACGCTCAAGATTTAGCTCTCCTTGTGTTCGTGCAAAGGAGCATGAAAATCTTACAGTTTCTGTTACTACTCGTGCAAAAGCTCCAGAGGAGAGTTCGGGGGATCAAAGTAAAAATGATGGAGGATTTGAAACATGTAACCTATTTGGTGGAACACCTTTCAGGAAAGGTTTTGAATCGCCTTCTGCATGGAAATCTCCTTGGCTCAGGAATACTTTTCTCTGTAGCCCAAATGCTGAAATTACAATTGAGGATTTTGGATTTTTCAAAAGCCCTGGAGGTGATAGAAGCTATGATGCTATTGGATTGTTAAAAGAAGTTGGTGAACAAACTGCTGCTACATATGAAAATGCACAGGAGATTTTGAATAATGATACTCCTAAAGCATTACCTAAAGGCACAGCAGGAGATGACAAGAATTGCGACGACGAAAATAATGATTCTAACAATGCAAACAATTCTAAATTGGCTTCAAATGCTTTGGTTGAGCGCCGCGTACTCGACTTTAGTGAATGTGGATCACCTGATAAGAATGATAGCAGCAAATCGTCAGCTAGTCAGCCATGA 2946 0.4117 MDGDRKMAVPHVDGSADGAQKLKAALHGRTTGPTRRSTKGQWTPEEDETLRKAVERFQGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEVMIELVNKIGPKKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTQEEELALIRAHQIYGNKWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQLQSAPHDGNPSQSMATTSSRVQCNADDSVLQGTEGDEGLECSHESANALHFPSTREMTSVDLQTVGGECSLGTDHSPSQASCSEPYYISIDDTTTCIPEIAHHEACSSEFNEQFSHEPGNSINEDCQYNLHSLPNISSIDLGKDSSQLQRDYMESTGPSGIRDLANASMPMETTATDAAKPDHMLISDDECCRALFPEANNDICFIPGDYIKDVDTVEFSGQPPFVCQSCHFQISENCETSTLPLTCPQCSNNFKGMTSSQSTRPVHSAEPEDQQFVSSAPDNFTYAIDMPISPCIDATDGAVMRDVKQTCYPTDERPNMHTEKEGKGALCYEPPRFPSMDIPFLSCDLVQSGGDMQQEFSPLGIRQFMMSSMNCLTPSRLWDSPSRDDSPEALLKSAAKTFTGTPSILKKRRRDLLSPLSDKRIGKKLETEMTSSLSKAFSSLEADILSPSSLQKQNSEAPVFDDDKENYGQADKGKQVEEIIKSAVLEEKMSQRDALDSNSPGKVKQQPFDVDSKMKIDATTAVEIVQQSSRVLSEHDRNDLSLYSSDEVGVSDRVLGSSVIIPRNMNNRSSEIAPNQSIPSKPSSESQRSRFSSPCVRAKEHENLTVSVTTRAKAPEESSGDQSKNDGGFETCNLFGGTPFRKGFESPSAWKSPWLRNTFLCSPNAEITIEDFGFFKSPGGDRSYDAIGLLKEVGEQTAATYENAQEILNNDTPKALPKGTAGDDKNCDDENNDSNNANNSKLASNALVERRVLDFSECGSPDKNDSSKSSASQP 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04769 981 SUPERFAMILY Homeodomain-like 88 184 IPR009057 -
Vivi4g04769 981 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 142 192 IPR017930 -
Vivi4g04769 981 MobiDBLite consensus disorder prediction 1 44 - -
Vivi4g04769 981 SUPERFAMILY Homeodomain-like 40 95 IPR009057 -
Vivi4g04769 981 FunFam Transcriptional activator Myb isoform A 38 90 - -
Vivi4g04769 981 ProSiteProfiles Myb-like domain profile. 34 85 IPR001005 -
Vivi4g04769 981 MobiDBLite consensus disorder prediction 773 800 - -
Vivi4g04769 981 MobiDBLite consensus disorder prediction 967 981 - -
Vivi4g04769 981 PANTHER MYB PROTEIN-RELATED 39 112 - -
Vivi4g04769 981 Gene3D - 38 90 - -
Vivi4g04769 981 Pfam Myb-like DNA-binding domain 91 137 IPR001005 -
Vivi4g04769 981 Pfam Myb-like DNA-binding domain 39 85 IPR001005 -
Vivi4g04769 981 Pfam Myb-like DNA-binding domain 143 185 IPR001005 -
Vivi4g04769 981 CDD SANT 145 185 IPR001005 -
Vivi4g04769 981 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 141 IPR017930 -
Vivi4g04769 981 MobiDBLite consensus disorder prediction 913 981 - -
Vivi4g04769 981 MobiDBLite consensus disorder prediction 810 836 - -
Vivi4g04769 981 ProSiteProfiles Myb-like domain profile. 138 188 IPR001005 -
Vivi4g04769 981 FunFam Transcriptional activator Myb isoform A 91 143 - -
Vivi4g04769 981 ProSiteProfiles Myb-like domain profile. 86 137 IPR001005 -
Vivi4g04769 981 MobiDBLite consensus disorder prediction 773 838 - -
Vivi4g04769 981 CDD SANT 93 137 IPR001005 -
Vivi4g04769 981 Gene3D - 91 142 - -
Vivi4g04769 981 Gene3D - 144 209 - -
Vivi4g04769 981 FunFam Transcription factor MYB3R-2 144 206 - -
Vivi4g04769 981 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 85 IPR017930 -
Vivi4g04769 981 SMART sant 142 190 IPR001005 -
Vivi4g04769 981 SMART sant 38 87 IPR001005 -
Vivi4g04769 981 SMART sant 90 139 IPR001005 -
Vivi4g04769 981 CDD SANT 42 85 IPR001005 -
Vivi4g04769 981 MobiDBLite consensus disorder prediction 655 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04769 Vivi-Chr4 176914730 176921412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04769 20 732 MYB Transcription Factor Family AT5G11510 39.569 1.77e-151 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi4g04769 Myb_DNA-binding 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04769 - K09420 aprc:113848458 1235.71