Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04753 ATGAGAGTTTCACCACAAAATTCAGAAACCGAGAGCACCTCAAATTCATCACCATCTACAACAAACTCAAACTCAATTCAAGACCAAGATTCCAACAACAACAACAAGAACCTTAAACGCAACCGCGACTCCAACAAACACCCCATCTACCGAGGCGTCCGCATGAGAAACTGGGGAAAGTGGGTGTCCGAAATCCGCGAGCCTCGCAAGAAGTCGCGGATTTGGCTCGGCACTTTCCCCACGGCTGAAATGGCAGCCAGAGCCCACGACGCTGCTGCCCTCTGCGTTAAAGGAAAATCCGCCATTCTCAATTTCCCTCACCTCGCAGATTCTCTTCCCAAACCCGCTTCTTTAGCCCCGCGCGACGTTCAGGCCGCGGCGGCTAAAGCAGCTCAAATGACCAATAATTTGGAATCATCACCATCGTCATCTTCTTCACTTTCATCATCGTTGTCATCTTCTTTGACAACGATGTCATCGTCCTCGTCGACAAGTCTACTGATGAAGACAGCAACAACACTGTCTTCATCAGCAGACTTAACCACAACATCTGACGAACTCAGCGAGATAATCGAGCTACCTACTTTAGAAAACGGTTATGATGATGTTACAAAAGAAGAGTTTCTCTTTGTTGACTCACAATCACAAGACTATACATGGATGTATCAACAACCAATAACATGGCTACAAACACCACAAGAAAACGGTTGTTGCGGTAGTGATCAATACGATGATGGATTTGGTAACAATAATGGTGTTGTAACTAATTTCGAGAGTTTTCTCTGGAATTACTAG 795 0.4553 MRVSPQNSETESTSNSSPSTTNSNSIQDQDSNNNNKNLKRNRDSNKHPIYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDAAALCVKGKSAILNFPHLADSLPKPASLAPRDVQAAAAKAAQMTNNLESSPSSSSSLSSSLSSSLTTMSSSSSTSLLMKTATTLSSSADLTTTSDELSEIIELPTLENGYDDVTKEEFLFVDSQSQDYTWMYQQPITWLQTPQENGCCGSDQYDDGFGNNNGVVTNFESFLWNY 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04753 264 MobiDBLite consensus disorder prediction 35 50 - -
Vivi4g04753 264 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Vivi4g04753 264 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Vivi4g04753 264 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Vivi4g04753 264 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Vivi4g04753 264 MobiDBLite consensus disorder prediction 127 151 - -
Vivi4g04753 264 MobiDBLite consensus disorder prediction 1 34 - -
Vivi4g04753 264 CDD AP2 48 108 IPR001471 GO:0003700|GO:0006355
Vivi4g04753 264 MobiDBLite consensus disorder prediction 1 51 - -
Vivi4g04753 264 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Vivi4g04753 264 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Vivi4g04753 264 MobiDBLite consensus disorder prediction 129 151 - -
Vivi4g04753 264 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Vivi4g04753 264 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 24 198 - -
Vivi4g04753 264 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04753 Vivi-Chr4 176727563 176728506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04753 21 252 AP2-EREBP Transcription Factor Family AT5G11590 52.743 1.52e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi4g04753 AP2 5.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04753 K09286 - gmx:100305349 214.927