Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04747 ATGTTTTTCTTCTTGTTTTTTCTTCTTCCACAGCTAACATATTCCAACTCCCAACCTTGTTTTTCTTCCTCCTGTGGAAAAATCACAAACATAACTCATCCTTTCAGACTAAAACAAGACCCAACCCACTGTGGAAACAGTAAGTACGAGTTGGATTGTGTGAACAACGTTACAGTATTGAGTTTGTATGATGGTTACTATTTTGTAGAATCAATCAATTACAAGAATTACACAATCCGAGTTGTTGACCCAAACATTCAATCCACCAATTGCTCCTCTCTCCCTCGCTTCTTCTTATACCGCTACAATTTCTCTTTTCAAGGATCATACGGCCAGTTTATTTCCAAAGAAAGTAGTTCATATCAATACAGTATAAATCGATCGAGTTCTACAGTACTGGAAAATATCGTTGAATATGATTTTCCTAAGTCAACGTATATAGGCCATTACAATGAATATGATTTATCTATGCCAGTAATTTACATGAAATGTACAAGTCCATCTAGTAAGGTTGTGGATAAGTACTATGTTGATGCCACTTCATGTTTGGGTCAAGACACATACGCTATTATTGGGGACCCACCCTTTGAAATTTTGGATCCTGAATGTCGTGTTAACCTTGTTACCCTCACATCCTTCTGGGGAAGTTCAGTTCTGTACGGGGACTACAGCAAGATTATAGGTAACATTTCGTACAGTGATATCCACGAGGCACTGAGATATGGATTTGAAATTTCATGGATGAAAGCCTCTTGTCCTTGTAACGAATGCTTACTCAATGACACCATCAACGAGGTTCAATGCAGCGAAACTATTTGTAGTTTTGACTCTTGCGGATATTGGGCAGACAAGGTCCGCCAAATGTTAGCTTACGTTACAGGCATCGACGAAGGACTTCGGGAGTTGACGGGCTTGAAAAAGTTAAATATTTATAAGCCAAGTATTAAGCTATATAGAGCAGGAATAGTTACAGGAAAGTATATTTTGCCATACCTTGGATCTAGATTTATATTGGGCTTCATAATTTTCTTTGTATTGTTGATCTATACATATCGAAGAAGACATGAATCAATATATGAGAACATCGAAGATTTTCTACAAGGTAATACTCTCGTGCCAATAAGGTATTCATACAAAGAGATAAAACAAATGACAAAAAATTTCAAGGTAAAATTGGGTGAAGGAGGTTATGGAGATGTTTATAGAGGAAACCTAATAAGTGGTCCATTTGTAGCCATTAAGATGTTGAAGATAAAATCAAAAACTAATGGGCAAGACTTCATAAGTGAAGTTGCAACATTAGGAAGAATATACCATTCAAATGTTGTAAGTCTCATTGGATTTTGCGTTGAAGGATCAAAACGTGCTCTTGTCTATGAGTACATGCCCAATGGCTCTCTTGATAAATATATTTTCAACAAAGAGGAAGCTACATCTTTAACTTACAACCAAGTATATGAAATATCTCTCGGAGTAGCACGTGGAATTTCTTATCTCCATCAAGGTTGTGACATGCAAATTTTGCATTTTGATATTAAGCCTCATAACATTCTTCTTGATGCAAATTTCATCCCAAAAGTTTCAGACTTTGGTCTTGCAAAGCTCTATCCTATTGACAATAGTATAGCCACTTTGACAGCAGCAAGAGGAACAATCGGCTACATGGCTCCAGAATTGTTCTATCAAAATATTGGGGGAATATCATATAAGGCCGACGTGTATAGCTTTGGAATGCTTTTGATTGAAATAACTAGTAGAAGAAAAAATTTGAATTCACATGCCGAGAAATCAAGTGAACTTTACTTTCCCTTTTGGATTTATGATCAATTGGTTCAAAAAAGAGAAAGTGAAATTAAAGACTTTATCATGGAGGAATTCAACGATGTTTTGAAGAAAATGTTCATCGTTGCACTTTGGTGTATACAATTGAAACCTATTGATCGTCCTTCAATGAACAAAGTAGTAGAAATGCTTGAAAATGTTCTTGAAAATATTGAAATGCCTCCAAAGCCTGTACTATATCCACATGAAACAATTCGTGAAAGTCTTGATACCACTTCAAAAGAAACTGAATCATATACTAGTTCTACTAGTTATGTTGAGGAAATCACAACCACTCCTTTGTTGAAGTTTTCTGCATGA 2142 0.3585 MFFFLFFLLPQLTYSNSQPCFSSSCGKITNITHPFRLKQDPTHCGNSKYELDCVNNVTVLSLYDGYYFVESINYKNYTIRVVDPNIQSTNCSSLPRFFLYRYNFSFQGSYGQFISKESSSYQYSINRSSSTVLENIVEYDFPKSTYIGHYNEYDLSMPVIYMKCTSPSSKVVDKYYVDATSCLGQDTYAIIGDPPFEILDPECRVNLVTLTSFWGSSVLYGDYSKIIGNISYSDIHEALRYGFEISWMKASCPCNECLLNDTINEVQCSETICSFDSCGYWADKVRQMLAYVTGIDEGLRELTGLKKLNIYKPSIKLYRAGIVTGKYILPYLGSRFILGFIIFFVLLIYTYRRRHESIYENIEDFLQGNTLVPIRYSYKEIKQMTKNFKVKLGEGGYGDVYRGNLISGPFVAIKMLKIKSKTNGQDFISEVATLGRIYHSNVVSLIGFCVEGSKRALVYEYMPNGSLDKYIFNKEEATSLTYNQVYEISLGVARGISYLHQGCDMQILHFDIKPHNILLDANFIPKVSDFGLAKLYPIDNSIATLTAARGTIGYMAPELFYQNIGGISYKADVYSFGMLLIEITSRRKNLNSHAEKSSELYFPFWIYDQLVQKRESEIKDFIMEEFNDVLKKMFIVALWCIQLKPIDRPSMNKVVEMLENVLENIEMPPKPVLYPHETIRESLDTTSKETESYTSSTSYVEEITTTPLLKFSA 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04747 713 Gene3D Phosphorylase Kinase; domain 1 364 461 - -
Vivi4g04747 713 Gene3D Transferase(Phosphotransferase) domain 1 462 669 - -
Vivi4g04747 713 ProSitePatterns Protein kinases ATP-binding region signature. 392 414 IPR017441 GO:0005524
Vivi4g04747 713 Pfam Protein tyrosine and serine/threonine kinase 388 658 IPR001245 GO:0004672|GO:0006468
Vivi4g04747 713 ProSiteProfiles Protein kinase domain profile. 386 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04747 713 FunFam PR5-like receptor kinase 462 670 - -
Vivi4g04747 713 Pfam Wall-associated receptor kinase galacturonan-binding 20 83 IPR025287 GO:0030247
Vivi4g04747 713 SMART serkin_6 386 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04747 713 FunFam serine/threonine-protein kinase PBS1-like 355 461 - -
Vivi4g04747 713 PANTHER RUST RESISTANCE KINASE LR10-RELATED 356 684 IPR045874 GO:0004672
Vivi4g04747 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 507 519 IPR008271 GO:0004672|GO:0006468
Vivi4g04747 713 SUPERFAMILY Protein kinase-like (PK-like) 372 659 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04747 Vivi-Chr4 176591207 176601628 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04747 4 694 Receptor kinase-like Gene Family AT5G38260 33.004 1.68e-104 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04747 PK_Tyr_Ser-Thr 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04747 - - vvo:131596073 1382.47