Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04746 ATGGCAACCTGTTCAAATATGATGATGGTCATAATTCTCACAGTGATTTGCAGCAGAGTTATATGGCAAGTTAATGGTTGTAGCGGAAGGGACTCCAGATGCGGACGTGACGGCCCGCCAATCCGATTTCCCTTCCGACTTAAAGACAGTAAAACTGAACATGGGTGCAGTTATACCGGCTTTGATCTTACTTGTTCAGACACACACAAAACACTTATTGAGCTTCCTTTACATTCTGGTCCACTTATACTCCAAGTCATAAGAATAGATTATGCAGGCCATTATCTAACCGCATCTGACCCTGAAAATTGCAATCCAGGACAGTTTTTAAAGCTCTTTCAATCACAAACTTCTCCCTTTCAATTAGATGAGAATCCCAACTACACTTATAACTTCACTTTCCTCCATTGTAGCTCATTATCCTGCCCGGTTCATGTTGTTAAGTCTTCTAATACACTCCTTGATTCGGGTGTGGATCCAATACTTTGCACCAAGACTTTAGATATTACTTCTTCACCGGTGTACCCGCCAATATATCAACAGGACAATTTGTATTTGGCTTGGTCACAACCCAATTGTTTCAAGTGTGAAATACAAGGCAAGATGTGTAAACTGAAAATCAACGGAACAGAAGATGAGACAGAATGTTTTGACCGTCATCACAAACCTACTAAGAAAATAATTCTATATGTCACAGTTCCGTTTGTTGGATTGATTCTGATGACATTGATTCTTACAACATGTTTGCGTGTCTATAACTATTTTAAAATGAAAGGTGAAGATGAGACTAGAATTGAAAAATTCTTAGAGGAATACAGGGCGCTAAATCCTGCAAGATTCTCGTATGCCGATATAAAGAGAGTTACGAATAATTTTAGAGAAAAGTTGGGTGAAGGAGCTCACGGAGCAGTTTTCAAAGGTAAATTATCTAATGAAATTTTCGTGGCTGTGAAGATGCTTAATAACACAGAGGGTGATGGAAAAGAATTCATCAATGAAGTGAAAGCTATGGGAAAAGTTCATCACATTAATGTGGTTCGTTTGCTTGGATTTTGTGCTGATGGATGCTATCGTGCTCTTGTTTACAATTTCTTTTCAAACGGTTCATTACAAAATTTTATAACCCGACCTGATGATAAGGACCGCTTTCTCGGTTGGGAGAAATTACATCAGATTGCTATCGGCATAGCAAAGGGTATTGAGTATCTTCATATGAGTTGTGATCAACAAATTCTTCACTTTGATATTAATCCGCACAATGTGTTATTAGACGACAAGTTACTTCCCAAAATTACTGATTTTGGTTTGGCTAAATTGTGTTCTAAAGATCAAAGTGCTGTTTCAGTAACTGCTGCAAGAGGGACTTTGGGTTACATTGCACCTGAAGTATTTTCGAGAAACTTTGGGAATGTATCGTATAAAGCAGACATATATAGTTATGGAATGTTACTACTTGAAATGGTTGGAGGAAGAAAGAATATAAGCCAGTTGTCTGAGGAAAATTCTCAAGTTCTATATCCAGAATGGATTCACAATCTCTTTGAAGGGAAAGATATGCAAGTGAAAATTGAGGGAGTAGAAAATGATATAATATTAAAGAAGCTTGCAATTGTAGGACTATGGTGCATTCAGTGGCACGCAATAAACCGCCCGTCAATAAAAGTTGTGCTTCGAATGTTAGAGGCTTTAGAAGATGAAGACTTGGTTGTGCCGCCAAACCCTATTAGCTCAAATACTTTCGAAGTTGCTAAAATCCCGACAAAATACTTGACCTTAGAGTTGGAATCTATACATGAATGA 1800 0.3789 MATCSNMMMVIILTVICSRVIWQVNGCSGRDSRCGRDGPPIRFPFRLKDSKTEHGCSYTGFDLTCSDTHKTLIELPLHSGPLILQVIRIDYAGHYLTASDPENCNPGQFLKLFQSQTSPFQLDENPNYTYNFTFLHCSSLSCPVHVVKSSNTLLDSGVDPILCTKTLDITSSPVYPPIYQQDNLYLAWSQPNCFKCEIQGKMCKLKINGTEDETECFDRHHKPTKKIILYVTVPFVGLILMTLILTTCLRVYNYFKMKGEDETRIEKFLEEYRALNPARFSYADIKRVTNNFREKLGEGAHGAVFKGKLSNEIFVAVKMLNNTEGDGKEFINEVKAMGKVHHINVVRLLGFCADGCYRALVYNFFSNGSLQNFITRPDDKDRFLGWEKLHQIAIGIAKGIEYLHMSCDQQILHFDINPHNVLLDDKLLPKITDFGLAKLCSKDQSAVSVTAARGTLGYIAPEVFSRNFGNVSYKADIYSYGMLLLEMVGGRKNISQLSEENSQVLYPEWIHNLFEGKDMQVKIEGVENDIILKKLAIVGLWCIQWHAINRPSIKVVLRMLEALEDEDLVVPPNPISSNTFEVAKIPTKYLTLELESIHE 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04746 599 Gene3D Transferase(Phosphotransferase) domain 1 365 570 - -
Vivi4g04746 599 PANTHER RUST RESISTANCE KINASE LR10-RELATED 261 577 IPR045874 GO:0004672
Vivi4g04746 599 FunFam serine/threonine-protein kinase PBS1-like 258 364 - -
Vivi4g04746 599 ProSiteProfiles Protein kinase domain profile. 290 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04746 599 Gene3D Phosphorylase Kinase; domain 1 264 364 - -
Vivi4g04746 599 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Vivi4g04746 599 SUPERFAMILY Protein kinase-like (PK-like) 270 561 IPR011009 -
Vivi4g04746 599 FunFam PR5-like receptor kinase 365 572 - -
Vivi4g04746 599 Pfam Wall-associated receptor kinase galacturonan-binding 29 99 IPR025287 GO:0030247
Vivi4g04746 599 Pfam Protein tyrosine and serine/threonine kinase 292 501 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04746 Vivi-Chr4 176580699 176583270 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04746 224 590 Receptor kinase-like Gene Family AT1G66910 42.063 6.17e-94 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04746 PK_Tyr_Ser-Thr 2.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04746 - - ahf:112783872 643.269