Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04745 ATGGCAACCTGTTCAAATATGATGATGGTCATAATTCTCACAGTGATTTGCAGCAGAGTTATATGGCAAGTTAATGGTTGTAGCGGAAGGGACTCCAGATGCGGACGTGACGGCCCGCCAATCCGATTTCCCTTCCGACTTAAAGACAGTAAAACTGAACATGGGTGCAGTTATACCGGCTTTGATCTTACTTGTTCAGACACACACAAAACACTTATTGAGCTTCCTTTACATTCTGGTCCACTTATACTCCAAGTCATAAGAATAGATTATGCAGGCCATTATCTAACCGCATCTGACCCTGAAAATTGCAATCCAGGACAGTTTTTAAAGCTCTTTCAATCACAAACTTCTCCCTTTCAATTAGATGAGAATCCCAACTACACTTATAACTTCACTTTCCTCCATTGTAGCTCATTATCCTGCCCGGTTCATGTTGTTAAGTCTTCTAATACACTCCTTGATTCGGGTGTGGATCCAATACTTTGCACCAAGACTTTAGATATTACTTCTTCACCGGTGTACCCGCCAATATATCAACAGGACAATTTGTATTTGGCTTGGTCACAACCCAATTGTTTCAAGTGTGAAATACAAGGCAAGATGTGTAAACTGAAAATCAACGGAACAGAAGATGAGACAGAATGTTTTGACCGTCATCACAAACCTACTAAGAAAATAATTCTATATGTCACAGGTGAAGATGAGACTAGAATTGAAAAATTCTTAGAGGAATACAGGGCGCTAAATCCTGCAAGATTCTCGTATGCCGATATAAAGAGAGTTACGAATAATTTTAGAGAAAAGTTGGGTGAAGGAGCTCACGGAGCAGTTTTCAAAGGTAAATTATCTAATGAAATTTTCGTGGCTGTGAAGATGCTTAATAACACAGAGGGTGATGGAAAAGAATTCATCAATGAAGTGAAAGCTATGGGAAAAGTTCATCACATTAATGTGGTTCGTTTGCTTGGATTTTGTGCTGATGGATGCTATCGTGCTCTTGTTTACAATTTCTTTTCAAACGGTTCATTACAAAATTTTATAACCCGACCTGATGATAAGGACCGCTTTCTCGGTTGGGAGAAATTACATCAGATTGCTATCGGCATAGCAAAGGGTATTGAGTATCTTCATATGAGTTGTGATCAACAAATTCTTCACTTTGATATTAATCCGCACAATGTGTTATTAGACGACAAGTTACTTCCCAAAATTACTGATTTTGGTTTGGCTAAATTGTGTTCTAAAGATCAAAGTGCTGTTTCAGTAACTGCTGCAAGAGGGACTTTGGGTTACATTGCACCTGAAGTATTTTCGAGAAACTTTGGGAATGTATCGTATAAAGCAGACATATATAGTTATGGAATGTTACTACTTGAAATGGTTGGAGGAAGAAAGAATATAAGCCAGTTGTCTGAGGAAAATTCTCAAGTTCTATATCCAGAATGGATTCACAATCTCTTTGAAGGGAAAGATATGCAAGTGAAAATTGAGGGAGTAGAAAATGATATAATATTAAAGAAGCTTGCAATTGTAGGACTATGGTGCATTCAGTGGCACGCAATAAACCGCCCGTCAATAAAAGTTGTGCTTCGAATGTTAGAGGCTTTAGAAGATGAAGACTTGGTTGTGCCGCCAAACCCTATTAGCTCAAATACTTTCGAAGTTGCTAAAATCCCGACAAAATACTTGACCTTAGAGTTGGAATCTATACATGAATGA 1722 0.3821 MATCSNMMMVIILTVICSRVIWQVNGCSGRDSRCGRDGPPIRFPFRLKDSKTEHGCSYTGFDLTCSDTHKTLIELPLHSGPLILQVIRIDYAGHYLTASDPENCNPGQFLKLFQSQTSPFQLDENPNYTYNFTFLHCSSLSCPVHVVKSSNTLLDSGVDPILCTKTLDITSSPVYPPIYQQDNLYLAWSQPNCFKCEIQGKMCKLKINGTEDETECFDRHHKPTKKIILYVTGEDETRIEKFLEEYRALNPARFSYADIKRVTNNFREKLGEGAHGAVFKGKLSNEIFVAVKMLNNTEGDGKEFINEVKAMGKVHHINVVRLLGFCADGCYRALVYNFFSNGSLQNFITRPDDKDRFLGWEKLHQIAIGIAKGIEYLHMSCDQQILHFDINPHNVLLDDKLLPKITDFGLAKLCSKDQSAVSVTAARGTLGYIAPEVFSRNFGNVSYKADIYSYGMLLLEMVGGRKNISQLSEENSQVLYPEWIHNLFEGKDMQVKIEGVENDIILKKLAIVGLWCIQWHAINRPSIKVVLRMLEALEDEDLVVPPNPISSNTFEVAKIPTKYLTLELESIHE 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04745 573 ProSitePatterns Protein kinases ATP-binding region signature. 270 292 IPR017441 GO:0005524
Vivi4g04745 573 Pfam Protein tyrosine and serine/threonine kinase 266 475 IPR001245 GO:0004672|GO:0006468
Vivi4g04745 573 FunFam PR5-like receptor kinase 339 546 - -
Vivi4g04745 573 Gene3D Phosphorylase Kinase; domain 1 238 338 - -
Vivi4g04745 573 SUPERFAMILY Protein kinase-like (PK-like) 244 535 IPR011009 -
Vivi4g04745 573 Gene3D Transferase(Phosphotransferase) domain 1 339 544 - -
Vivi4g04745 573 FunFam serine/threonine-protein kinase PBS1-like 233 338 - -
Vivi4g04745 573 Pfam Wall-associated receptor kinase galacturonan-binding 29 99 IPR025287 GO:0030247
Vivi4g04745 573 PANTHER RUST RESISTANCE KINASE LR10-RELATED 235 551 IPR045874 GO:0004672
Vivi4g04745 573 ProSiteProfiles Protein kinase domain profile. 264 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04745 Vivi-Chr4 176580697 176583278 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04745 216 564 Receptor kinase-like Gene Family AT1G66910 42.978 4.28e-92 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04745 PK_Tyr_Ser-Thr 2.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04745 - - ahf:112783872 620.542