Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04744 ATGATTATGTTTCTCTTCTTCTTGTTTCTTGTTCCACATAATACTTATTCCAACTCCCTACCTTGCTTTTCTTCCTCCTGTGGAAAAATTACCAACATAACCTATCCCTTTAGACTAAAACAAGACCCAGAACACTGTGGGAACAGTAAGTACGAGTTGGATTGTGTGAACAACGTTACTGTATTGAGTTTATATGATGGTTATTTTAGGGTAGAATCAATAAATTACAACAATTACACAATCCGAGTCGTTGACCCAAACATTCAACCCTCCAATTGCTCATCTCTCCCTCGCTTCTTCTTATCCCAAAACAACTTTACTTATTACAATGATTCAGAGCAAAGGTACCTTCCCAAAGAAAATAATTCATATCAGTACTTCTTAAATCGAAATGATTACTATGGATTAGATTTATCTATGCCAGTAATTTACATGAAGTGTACAAGTCCACCTAGTAAGGTTGTCGATAAGTATTATGCCAATACAACTTCATGCTTGGATCAACACACATACGCCATTGTTGGGGACCCACCCTTTAAAATTTTGGAGCCTCAATGCCGTGTTAAGTTTGTTACCCTCTCGTCCTTCTGGGGAGATTTTTATACTTACGACAAAAACATTTTAGGAAACATTTCTTATATTGATATTCACAAAGCGCTACAATATGGATTTGAAATTTCATGGATGAAAGCCTCTTGTCCTTGTGATGAATGCTTGCTCAATGATACCATCAACAAGATTCAATGTTTCGAAGGCAGTTGTCCATTTGACTCTTGCGGAGCTTGGGCAGACAAGGTCCGCCTAATGTATGATTACGTTGCTGGCATCTACGAAGGATTTCGTGAGCTCACAGGCATGGGTCATATAATCATATATAAGTCAAGTATTAACGTATATAGAGCGGGAATAGTTACAGGAAGGTATATTTTGCCATACCTTGCACCTAGAACTATATTGGGCATCATAATTTTCTCTGTGTTTTTGATCTATACATATCGAAGAAGACATGAATCAATATATGAAAATATTGAAGATTTTCTACAAAGTAATACTCTCATGCCAATAAGGTATTCATACAAAGAGATAAAACAAATGACAAAAAATTTCAAGGTAAAATTGGGTGAAGGAGGTTATGGAGATGTGTATAGAGGAAACCTAATAAGTGGTCCATTTGTAGCCATTAAGATGTTGAAGATAAAATCAAAAACTAATGGGCAAGAATTCATGAGTGAAGTTGCTACTTTAGGAAGAATATACCATTCAAATGTGGTACGACTTGTTGGATTTTGCGTTGAAGGATCAAAACGTGCTCTTGTATATGAGTACATGCCCAATGGCTCTCTTGATAAATATATTTTCAACAAAGACGGAGTTATATCTTTAACTCACGACCAAGTATATGATATATCTCTAGGAGTAGCACGTGGAATTTCTTATCTCCATCAAGGTTGTGATATGCAAATTTTGCATTTTGATATTAAGCCTCATAACATTCTTCTTGATGCAAATTTCATCCCAAAAATTTCAGACTTTGGTCTTGCAAAGCTCTATCCTATCAACAATAGTATTGCCACTTTGACAGCAGCAAGAGGAACAATCGGGTACATGGCTCCAGAATTGTTCTATCAAAACATTGGGGGAATATCATATAAGGCCGACGTGTATAGCTTTGGAATGCTTTTGATTGAAATGGCTAGTAGGAGAAGAAATTTGAATTCACATGCGGGGAATTCAAGTCAACTCTACTTTCCATTTTGGATTTATGATCAATTGGTCAAAAAAAGGGAAAGAGAAATGGAAGATTTCATCATGGAGGAATTTAACGATGTTTTGAAAAAAATGTTCCTCATTGCACTTTGGTGTATACAGTTGAAACCCATTGATCGCCCTTCAATGGACAAAGTAGTGGAAATGCTTGAAAATGTTCTTGAAAATATTGAAATGCCTCCAAAGCCTGTCCTATATCCACATGAAACAATTCATGAGAATCTTGATACCACTTCAAATGAAACTGAATCAGATACTGGTTCTACCAGTTATGTTGAGGAAATCACAACCACTCCTCTATTGATGTTTTCGGCTTGA 2085 0.3612 MIMFLFFLFLVPHNTYSNSLPCFSSSCGKITNITYPFRLKQDPEHCGNSKYELDCVNNVTVLSLYDGYFRVESINYNNYTIRVVDPNIQPSNCSSLPRFFLSQNNFTYYNDSEQRYLPKENNSYQYFLNRNDYYGLDLSMPVIYMKCTSPPSKVVDKYYANTTSCLDQHTYAIVGDPPFKILEPQCRVKFVTLSSFWGDFYTYDKNILGNISYIDIHKALQYGFEISWMKASCPCDECLLNDTINKIQCFEGSCPFDSCGAWADKVRLMYDYVAGIYEGFRELTGMGHIIIYKSSINVYRAGIVTGRYILPYLAPRTILGIIIFSVFLIYTYRRRHESIYENIEDFLQSNTLMPIRYSYKEIKQMTKNFKVKLGEGGYGDVYRGNLISGPFVAIKMLKIKSKTNGQEFMSEVATLGRIYHSNVVRLVGFCVEGSKRALVYEYMPNGSLDKYIFNKDGVISLTHDQVYDISLGVARGISYLHQGCDMQILHFDIKPHNILLDANFIPKISDFGLAKLYPINNSIATLTAARGTIGYMAPELFYQNIGGISYKADVYSFGMLLIEMASRRRNLNSHAGNSSQLYFPFWIYDQLVKKREREMEDFIMEEFNDVLKKMFLIALWCIQLKPIDRPSMDKVVEMLENVLENIEMPPKPVLYPHETIHENLDTTSNETESDTGSTSYVEEITTTPLLMFSA 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04744 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 488 500 IPR008271 GO:0004672|GO:0006468
Vivi4g04744 694 SUPERFAMILY Protein kinase-like (PK-like) 351 640 IPR011009 -
Vivi4g04744 694 Pfam Wall-associated receptor kinase galacturonan-binding 22 85 IPR025287 GO:0030247
Vivi4g04744 694 SMART serkin_6 367 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04744 694 ProSitePatterns Protein kinases ATP-binding region signature. 373 395 IPR017441 GO:0005524
Vivi4g04744 694 ProSiteProfiles Protein kinase domain profile. 367 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04744 694 PANTHER RUST RESISTANCE KINASE LR10-RELATED 337 663 IPR045874 GO:0004672
Vivi4g04744 694 Gene3D Transferase(Phosphotransferase) domain 1 443 650 - -
Vivi4g04744 694 FunFam serine/threonine-protein kinase PBS1-like 335 442 - -
Vivi4g04744 694 Pfam Protein kinase domain 370 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04744 694 FunFam PR5-like receptor kinase 443 651 - -
Vivi4g04744 694 Gene3D Phosphorylase Kinase; domain 1 342 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04744 Vivi-Chr4 176572172 176577388 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04744 307 673 Receptor kinase-like Gene Family AT4G18250 45.000 2.43e-102 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04744 Pkinase 5.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04744 - - vvo:131596073 1150.96