Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04742 ATGGCCAAAATCGCGTTAGGAACTGCCGGAGAAGCCACTCAACCTGATTGCATCCAGGCTCTCATCGTTGAATTCATTGCCACCTTTCTCTTTGTCTTTGCTGGTGTTGGTTCTGCAATCACTGCCGATAAACTCAGTGGAGATGCGTTGGTGGGATTGTTTTTTGTGGCTATAACACATGCTCTTGTGGTGGCTGTCATGATTTCTGCCGCTCACATTTCCGGTGGCCATTTGAATCCCGCCGTGACATTAGGCCTCCTTGTCGGCGGCCATATCACCGCTGTCCGTTCGGTTTTATATTGGATTGATCAATTGATTGCATCTGCAGCAGCTTGTTATCTTCTTCATTACCTAACCGGTGGAATGACAACTCCAGCTCATACACTTGCAAGTGGAATAGGGTACACACAAGGAGTAGTTTGGGAGATTGTGTTGACATTCTCTTTGTTGTTCACTGTCTATGCAACTATGGTTGATCCTAAGAAGGGAGCACTTGCTGGGCTTGGACCAACTTTGGTTGGGTTTGTGGTAGGGGCTAATATCTTGGCTGGTGGGGCATTTTCAGCTGGTTCAATGAACCCAGCAAGATCTTTTGGGCCTGCTTTGGTTAGTGGAAACTGGACTGATCATTGGGTTTATTGGGTTGGGCCACTTATTGGTGGTGGGCTTGCGGGTTTTGTTTACGAGAATTTCTTTATTAATAGAGATCATGTTCCTCTTGTTGATGAAGAAAACTACTAA 741 0.4602 MAKIALGTAGEATQPDCIQALIVEFIATFLFVFAGVGSAITADKLSGDALVGLFFVAITHALVVAVMISAAHISGGHLNPAVTLGLLVGGHITAVRSVLYWIDQLIASAAACYLLHYLTGGMTTPAHTLASGIGYTQGVVWEIVLTFSLLFTVYATMVDPKKGALAGLGPTLVGFVVGANILAGGAFSAGSMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGFVYENFFINRDHVPLVDEENY 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04742 246 Pfam Major intrinsic protein 13 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi4g04742 246 FunFam Probable aquaporin TIP1-1 2 244 - -
Vivi4g04742 246 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Vivi4g04742 246 CDD MIP 19 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi4g04742 246 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi4g04742 246 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi4g04742 246 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi4g04742 246 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi4g04742 246 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi4g04742 246 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi4g04742 246 PANTHER AQUAPORIN-8 4 235 IPR034294 -
Vivi4g04742 246 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Vivi4g04742 246 SUPERFAMILY Aquaporin-like 13 239 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04742 Vivi-Chr4 176536505 176538145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04742 1 245 Major Intrinsic Protein MIP AT2G25810 77.551 3.57e-132 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04742 K09873 - gmx:100811447 425.631