Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04730 ATGGTATTAAGAAATACTCCAACATTCCAACTAACATATTCCAAACTTCCAGTTCCAGCCATGTTTTTCTTCTTGTTTTTTCTTCTTCCACAGCTAACATATTCCAAACTTTCAGCCATGTTTTTCTTCTTGTTTTTTCTTCTTCCACAGCTAACATATTCCAACTCCCTGCCTTGTTTTTCTTCTTCCTGTGGAAAAATCACAAACATAACTCATCCATTCAGACTAAAACAAGACCCAGAACACTGTGGGAACAATAAGTACGAGTTGGATTGTGTGAACAACGTTACAATATTGAGTTTGTATGGTGGTTACTATTTGGTAGAATCAATAAATTACAACAATTACACAATCCGAGTTGTTGACCCAAACATTCAACCCACCAATTGCTCCTCTCTTCCTCGCTTCTTCTTATACCGCTACAATTTCTCTTATCAAGGATCATACGGCCAGTTTATTTCCAAAGAAAGTAGTTCATATCAATACAGTATAAATCGATCGAGTTCTACGGTACTGGAAAATATGGTTGAATATGATTTTTCTAAGTCAACGTATATAGGCCACTACAATGAATATGATTTATCTATGCCAGTAATTTACATGAAATGTAAAAGTCCATCTAGTAAGGTTGTTGATAAGTACTATGTTGATGCCACTTCATGCTTGGGTCAAGACACATACGCTATTATTGGGGACCCACCCTTTGAAATTTTGGATCCTGAATGTCGTGTTAATCTTGTTACCCTCACATCCTTCTGGGGAAGTTCAGTTCTGTACGGGGACTACAGCAAGATTATAGGTAACATTTTGTATAGTGATATCCACGAGGCACTGAGATATGGATTTGAAATTTCATGGATGAAAGCCTCTTGTCCTTGTAACGAATGCTTACTCAATGACACCATCAACGAGGTTCAATGCAGCGAAACTATTTGTAGTTTTGACTCTTGCGGATATTGGGCAGACAAGGTCCGCCAAATGTTAGCTTACGTTACAGGCATCGACGAAGGACTTCGGGAGTTGACGGGCTTGAAAAAGTTAAATATTTATAAGCCAAGTATTAAGCTATATAGAGCAGGAATAGTTACAGGAAAGTATATTTTGCCATACCTTGGATCTAGATTTATATTGGGCTTCATAATTTTCTTTGTATTGTTGATCTATACATATCGAAGAAGACATGAATCAATATATGAGAACATCGAAGATTTTCTACAAGGTAATACTCTCGTGCCAATAAGGTATTCATACAAAGAGATAAAACAAATGACAAAAAATTTCAAGGTAAAATTGGGTGAAGGAGGTTATGGAGATGTTTATAGAGGAAACCTAATAAGTGGTCCATTTGTAGCCATTAAGATGTTGAAGATAAAATCAAAAACTAATGGGCAAGACTTCATAATTGAAGTTGCAACATTAGGAAGAATATACCATTCAAATGTTGTAAGTCTCATTGGATTTTGCGTTGAAGGATCAAAACGTGCTCTTGTCTATGAGTACATGCCCAATGGCTCTCTTGATAAATATATTTTCAACAAAGAGGAAGCTACATCTTTAACTTACAACCAAGTATATGAAATATCTCTCGGAGTAGCACGTGGAATTTCTTATCTCCATCAAGGTTGTGACATGCAAATTTTGCATTTTGATATTAAGCCTCATAACATTCTTCTTGATGCAAATTTCATCCCAAAAGTTTCAGACTTTGGTCTTGCAAAGCTCTATCCTATTGACAATAGTATAGCCACTTTGACAGCAGCAAGAGGAACAATCGGCTACATGGCTCCAGAATTGTTCTATCAAAATATTGGGGGAATATCATATAAGGCCGACGTGTATAGCTTTGGAATGCTTTTGATTGAAATAACTAGTAGAAGAAAAAATTTGAATTCACATGCCGAGAAATCAAGTGAACTTTACTTTCCCTTTTGGATTTATGATCAATTGGTTCAAAAAAGAGAAAGTGAAATTAAAGACTTTATCATGGAGGAATTCAACGATGTTTTGAAGAAAATGTTCATCGTTGCACTTTGGTGTATACAATTGAAACCTATTGATCGTCCTTCAATGAACAAAGTAGTAGAAATGCTTGAAAATGTTCTTGAAAATATTGAAATGCCTCCAAAGCCTGTACTATATCCACATGAAACAATTCGTGAAAGTCTTGATACCACTTCAAAAGAAACTGAATCATATACTAGTTCTACTAGTTATGTTGAGGAAATCACAACCACTCCTTTGTTGAAGTTTTCTGCATGA 2259 0.3559 MVLRNTPTFQLTYSKLPVPAMFFFLFFLLPQLTYSKLSAMFFFLFFLLPQLTYSNSLPCFSSSCGKITNITHPFRLKQDPEHCGNNKYELDCVNNVTILSLYGGYYLVESINYNNYTIRVVDPNIQPTNCSSLPRFFLYRYNFSYQGSYGQFISKESSSYQYSINRSSSTVLENMVEYDFSKSTYIGHYNEYDLSMPVIYMKCKSPSSKVVDKYYVDATSCLGQDTYAIIGDPPFEILDPECRVNLVTLTSFWGSSVLYGDYSKIIGNILYSDIHEALRYGFEISWMKASCPCNECLLNDTINEVQCSETICSFDSCGYWADKVRQMLAYVTGIDEGLRELTGLKKLNIYKPSIKLYRAGIVTGKYILPYLGSRFILGFIIFFVLLIYTYRRRHESIYENIEDFLQGNTLVPIRYSYKEIKQMTKNFKVKLGEGGYGDVYRGNLISGPFVAIKMLKIKSKTNGQDFIIEVATLGRIYHSNVVSLIGFCVEGSKRALVYEYMPNGSLDKYIFNKEEATSLTYNQVYEISLGVARGISYLHQGCDMQILHFDIKPHNILLDANFIPKVSDFGLAKLYPIDNSIATLTAARGTIGYMAPELFYQNIGGISYKADVYSFGMLLIEITSRRKNLNSHAEKSSELYFPFWIYDQLVQKRESEIKDFIMEEFNDVLKKMFIVALWCIQLKPIDRPSMNKVVEMLENVLENIEMPPKPVLYPHETIRESLDTTSKETESYTSSTSYVEEITTTPLLKFSA 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04730 752 Pfam Wall-associated receptor kinase galacturonan-binding 59 122 IPR025287 GO:0030247
Vivi4g04730 752 PANTHER RUST RESISTANCE KINASE LR10-RELATED 395 723 IPR045874 GO:0004672
Vivi4g04730 752 SUPERFAMILY Protein kinase-like (PK-like) 411 698 IPR011009 -
Vivi4g04730 752 Gene3D Transferase(Phosphotransferase) domain 1 501 708 - -
Vivi4g04730 752 SMART serkin_6 425 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04730 752 Pfam Protein kinase domain 428 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04730 752 ProSitePatterns Serine/Threonine protein kinases active-site signature. 546 558 IPR008271 GO:0004672|GO:0006468
Vivi4g04730 752 ProSiteProfiles Protein kinase domain profile. 425 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04730 752 ProSitePatterns Protein kinases ATP-binding region signature. 431 453 IPR017441 GO:0005524
Vivi4g04730 752 Gene3D Phosphorylase Kinase; domain 1 403 500 - -
Vivi4g04730 752 FunFam serine/threonine-protein kinase PBS1-like 394 500 - -
Vivi4g04730 752 FunFam PR5-like receptor kinase 501 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04730 Vivi-Chr4 176236400 176246596 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04730 376 733 Receptor kinase-like Gene Family AT1G66910 46.216 9.39e-102 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04730 Pkinase 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04730 - - vvo:131596073 1482.23