Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04729 ATGGCAACCTGTTCAAATATGATGATGGTCATAATTCTCACAGTGATTTGCAGCAGAGTTATATGGCAAGTTAATGGTTGTAGTGGAAGGGACTCCAGATGCGGACGTGACGGCCCGCCAATCCGATTTCCCTTCCGACTTAAAGACAGTAAAACTGAACATGGGTGCAGCTATACCGGCTTTGATCTTACTTGTTCAGATAAACACAAAACACTTATTGAGCTTCCTTTACATTCTGGTCCACTTATCCTCCAAGTCATAAGCATAAATTATCTAAGCCAATTTCTAACAGTATCTGACCCGGAAAATTGCATTCCAGGACAGTTTTTAAAGCTCTTTCAATCACAAACTTCTCTTCAATCACAAACTTCTCCCTTTCAATTAGATGGTAATCCCCCCAATGTCACTTATAACTTCACTTTCCTCCATTGTAGCTCATTATCCTGCCCGGTTCATGTTGTTGAGTCTTCTGATACACTGCTTGATTCGGGTGTGGATCCAATACTTTGCACCAAGACTTTAGATATTACTTCTTCATCAGTGTACCCGCCAATATATCAACAGGACAATTTGTATTTGGCTTGGTCACAACCCAATTGTTTCAAGTGTGAAATAGAAGGCAAGATGTGTAAACTGAAAATCAACGGAACAGAAGATGAGACAGAATGTTTTGATCGTCATCACAAACCTACTAAGAAAATAATTCTATATGTCACAGTTCCGTTCGTTGGTTTGATTCTGGTGACATTGATTCTTACAACATGTTTGCGTGTCTATAACTATTTTAAAATGAAAGGTGAAGATGAGACTAGAATTGAAAAATTCTTAGAGGAATACAGGGCGCTAAATCCTGCAAGATTCTCGTATGCCGATATAAAGAGAGTTACGAATAATTTTAGAGAAAAGTTGGGTGAAGGAGCTCACGGAGCAGTTTTCAAAGGTAAATTATCTAATGAAATTTTCGTGGCTGTGAAGATGCTTAATAACACAGAGGGTGATGGAAAAGAATTCATCAATGAAGTGAAAGCTATGGGAAAAGTTCATCACATTAATGTGGTTCGTTTGCTTGGATTTTGTGCTGATGGATGCTATCGTGCTCTTGTTTACAATTTCTTTTCAAACGGTTCATTACAAAATTTTATAACCCGACCTGATGATAAGGACCGCTTTCTGGGTTGGGAGAAATTACATCAGATTGCTATCGGCATAGCAAAGGGTATTGAGTATCTTCATATGAGTTGTGATCAACAAATTCTTCACTTTGATATTAATCCTCACAATGTGTTATTAGACGACAAGTTACTTCCCAAAATAACAGATTTTGGTTTGGCTAAATTGTGTTCTAAAGATCAAAGTGCTGTTTCAGTAACTGCTGCAAGAGGGACTTTGGGTTACATTGCGCCTGAAGTATTTTCGAGAAACTTTGGGAATATAACGTATAAAGCTGACATATATAGTTATGGGATGTTACTACTAGAAATGGTTGGAGGAAGAAAGAATATAAGTCAGTTGTCAGAGGAAAATTCTCAAGTTCTATATCCAGAATGGATTCACAATCTCTTTGAAGGGAAAGATATGCAAGTGAAAATTGAGGGAGTAGAAAATGATATAATATTAAAGAAGCTTGCAATTGTAGGACTATGGTGCATTCAGTGGCACGCAATAAACCGCCCGTCAATAAAAGTTGTGCTTCGAATGTTAGAGGCTTTAGAAGAAGAAGACTTGGTTGTGCCGCCAAATCCTATTAGCTCAAATACTTTCAAAGTTGCTGAAATCCCGACAAAATACTCGACCTTAGAGTTGGAATCTATACATGAATGA 1821 0.3773 MATCSNMMMVIILTVICSRVIWQVNGCSGRDSRCGRDGPPIRFPFRLKDSKTEHGCSYTGFDLTCSDKHKTLIELPLHSGPLILQVISINYLSQFLTVSDPENCIPGQFLKLFQSQTSLQSQTSPFQLDGNPPNVTYNFTFLHCSSLSCPVHVVESSDTLLDSGVDPILCTKTLDITSSSVYPPIYQQDNLYLAWSQPNCFKCEIEGKMCKLKINGTEDETECFDRHHKPTKKIILYVTVPFVGLILVTLILTTCLRVYNYFKMKGEDETRIEKFLEEYRALNPARFSYADIKRVTNNFREKLGEGAHGAVFKGKLSNEIFVAVKMLNNTEGDGKEFINEVKAMGKVHHINVVRLLGFCADGCYRALVYNFFSNGSLQNFITRPDDKDRFLGWEKLHQIAIGIAKGIEYLHMSCDQQILHFDINPHNVLLDDKLLPKITDFGLAKLCSKDQSAVSVTAARGTLGYIAPEVFSRNFGNITYKADIYSYGMLLLEMVGGRKNISQLSEENSQVLYPEWIHNLFEGKDMQVKIEGVENDIILKKLAIVGLWCIQWHAINRPSIKVVLRMLEALEEEDLVVPPNPISSNTFKVAEIPTKYSTLELESIHE 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04729 606 FunFam serine/threonine-protein kinase PBS1-like 265 371 - -
Vivi4g04729 606 ProSiteProfiles Protein kinase domain profile. 297 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04729 606 Gene3D Transferase(Phosphotransferase) domain 1 372 577 - -
Vivi4g04729 606 Pfam Wall-associated receptor kinase galacturonan-binding 29 100 IPR025287 GO:0030247
Vivi4g04729 606 PANTHER RUST RESISTANCE KINASE LR10-RELATED 268 584 IPR045874 GO:0004672
Vivi4g04729 606 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Vivi4g04729 606 SUPERFAMILY Protein kinase-like (PK-like) 277 568 IPR011009 -
Vivi4g04729 606 FunFam PR5-like receptor kinase 372 579 - -
Vivi4g04729 606 Gene3D Phosphorylase Kinase; domain 1 271 371 - -
Vivi4g04729 606 Pfam Protein tyrosine and serine/threonine kinase 299 508 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04729 Vivi-Chr4 176230431 176236102 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04729 231 594 Receptor kinase-like Gene Family AT1G66910 41.600 2.56e-93 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04729 PK_Tyr_Ser-Thr 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04729 - - ahf:112783872 637.106