Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04728 ATGATTATGTTTCTCTTCTTCTTGTTTCTTGCTCCACATAATACTTATTCCAATTCCCAGCCTTGCTTTTCTTCCTCCTGTGGAAAAATTACCAACATAACCTATCCCTTCAGACTAAAACAAGACCCAGAACACTGTGGGAACAATAGGTACGAGTTGGATTGTGTGAACAACGTTACTGTATTGAGTTTATATGATGGTTACTATTTTGTAGAATCGATAAATTACAACAATTACACAATCCGAGTTGTTGACCCAAACATTCAACCCACCAATTGCTCCTCTCTCCCTCGCTTCTTCTTATCCCAAAACAACTTTACTTATTACAATGATTCAGTGCAAAGTTACCTTCCCAAAGAAAATAATTCATATCAGTACTTCTTAAATCGAAATGATTACTATGAATTTAAATTATCTAGGCCAGTAATTTACATGAAGTGTACAAGTCCACCTAGTAAGGTTGTGGAAAAATACTATGCCGATACAACTTCATGCTTGGATCAACACACATACGCCATTGTTGGGGACCCACCCTTTAAAGTTTTGGAGCCCCAATGCCGTGTTAAGTTTGTTACCCTCACATCCTTCTGGTTCTGGGGTGATTTATATACTTACGATGAAAACATGTTAGAAAACATTTCATATATTGATATTCACAAAGGGCTACAATATGGATTTGAAATTTCATGGATGAAAGCCTCTTGTCCTTGTGATGAATGCTTGCTCAATGATACCATCAACAAGATTCAATGTTTCGAAGGCAGTTGTCCATTTGACTCTTGCGGAGCTTGGGCAGACAAGGTCCGCCTAATGTATGATTACGTTGCTGGCATCTACGAAGGACTTCGGGAGCTCACAGGCATGGATAAGATAATCATATATAAGTCCAGTATTAATGTATATAGAGCGGGAATAGTTACAGGAAGGTATATTTTGCCATACCTTGCACCTAGAACTATATTGGGCATCATAATTTTCTCCGTGTTTTTGATCTATACATATCGAAGAAGACATGAATCAATATATGAAAATATTGAAGATTTTCTACAAAGTAATACTCTCATGCCAATAAGGTATTCATACAAAGAGATAAAACAAATGACAAAAAATTTCAAGGTAAAATTGGGCGAAGGAGGTTATGGAGATGTGTATAGAGGAAACCTAATAAGTGGTCCATTTGTAGCCATTAAGATGTTGAAGATAAAATCAAAAACTAATGGGCAAGAATTCATGAGTGAAGTTACTACTTTAGGAAGAATATACCATTCAAATGTGGTACGACTTGTTGGATTTTGCGTTGAAGGATCAAAACGTGCTCTTGTATATGAGTACATGCCCAATGGCTCTCTTGATAAATATATTTTCAACAAAGACGGAGTTATATCTTTAACTCACGACCAAGTATATGATATATCTCTAGGAGTAGCACGTGGAATTTCTTATCTCCATCAAGGTTGTGATATGCAAATTTTGCATTTTGATATTAAGCCTCATAACATTCTTCTTGATGCAAATTTCATCCCAAAAATTTCAGACTTTGGTCTTGCAAAGCTCTATCCTATCAACAATAGTATTGCCACTTTGACAGCAGCAAGAGGAACAATCGGGTACATGGCTCCAGAATTGTTCTATCAAAACATTGGGGGAATATCATATAAGGCCGACGTGTATAGCTTTGGAATGCTTTTGATTGAAATGGCTAGTAGGAGAAGAAATTTGAATTCACATGCGGAGAATTCAAGTCAACTCTACTTTCCATTTTGGATTTATGATCAATTGGTCAAAAAAGGGGAAAGAGAAATGGAAGATTTCATCATGGAGGAATTTAACGATGTTTTGAAAAAAATGTTCCTCATTGCACTTTGGTGTATACAGTTGAAACCCATTGATCGCCCTTCAATGGACAAAGTAGTGGAAATGCTTGAAAATGTTCTTGAAAATATTGAAATGCCTCCAAAGCCTGTCCTATATCCACATGAAACAATTCATGAGAATCTTGATACCACTTCAAATGAAACTGAATCAGATACTGGTTCTACCAGTTATGTTGAGGAAATTACAACCACTCCTCTATTGATGTTTTCGGCTTGA 2091 0.363 MIMFLFFLFLAPHNTYSNSQPCFSSSCGKITNITYPFRLKQDPEHCGNNRYELDCVNNVTVLSLYDGYYFVESINYNNYTIRVVDPNIQPTNCSSLPRFFLSQNNFTYYNDSVQSYLPKENNSYQYFLNRNDYYEFKLSRPVIYMKCTSPPSKVVEKYYADTTSCLDQHTYAIVGDPPFKVLEPQCRVKFVTLTSFWFWGDLYTYDENMLENISYIDIHKGLQYGFEISWMKASCPCDECLLNDTINKIQCFEGSCPFDSCGAWADKVRLMYDYVAGIYEGLRELTGMDKIIIYKSSINVYRAGIVTGRYILPYLAPRTILGIIIFSVFLIYTYRRRHESIYENIEDFLQSNTLMPIRYSYKEIKQMTKNFKVKLGEGGYGDVYRGNLISGPFVAIKMLKIKSKTNGQEFMSEVTTLGRIYHSNVVRLVGFCVEGSKRALVYEYMPNGSLDKYIFNKDGVISLTHDQVYDISLGVARGISYLHQGCDMQILHFDIKPHNILLDANFIPKISDFGLAKLYPINNSIATLTAARGTIGYMAPELFYQNIGGISYKADVYSFGMLLIEMASRRRNLNSHAENSSQLYFPFWIYDQLVKKGEREMEDFIMEEFNDVLKKMFLIALWCIQLKPIDRPSMDKVVEMLENVLENIEMPPKPVLYPHETIHENLDTTSNETESDTGSTSYVEEITTTPLLMFSA 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04728 696 PANTHER RUST RESISTANCE KINASE LR10-RELATED 339 665 IPR045874 GO:0004672
Vivi4g04728 696 Pfam Wall-associated receptor kinase galacturonan-binding 22 85 IPR025287 GO:0030247
Vivi4g04728 696 FunFam serine/threonine-protein kinase PBS1-like 337 444 - -
Vivi4g04728 696 SMART serkin_6 369 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04728 696 SUPERFAMILY Protein kinase-like (PK-like) 353 642 IPR011009 -
Vivi4g04728 696 ProSiteProfiles Protein kinase domain profile. 369 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04728 696 FunFam PR5-like receptor kinase 445 653 - -
Vivi4g04728 696 Gene3D Transferase(Phosphotransferase) domain 1 445 652 - -
Vivi4g04728 696 Gene3D Phosphorylase Kinase; domain 1 344 444 - -
Vivi4g04728 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Vivi4g04728 696 Pfam Protein kinase domain 372 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04728 696 CDD STKc_IRAK 375 643 - -
Vivi4g04728 696 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04728 Vivi-Chr4 176221164 176227074 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04728 309 675 Receptor kinase-like Gene Family AT4G18250 45.000 5.03e-102 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04728 Pkinase 6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04728 - - vvo:131596073 1149.81