Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04725 ATGAGAGATTATTTCTATGGCATTTACAAAGGACTACGAGAGTTAACCGGCTTTGAAAATATAGGTTTATACGATTCAAGTATTCACTCGTACCAAACGGGAATATTTACTGGAAAGTATGTTGTTCCAGGCATTGTAGCTAGATTTATGTTCGGCTTGATATGTTTCTTAGTGTTATTGATTTATACGTATAGAAGAAGACATTCATCACTATATGAAAATATTGAAGATTTTCTACAAGGTAATACTCTCATGCCAATAAGGTATTCATATAAAGAGATAAAGCAGATGACAAAAGGTTTCAAGGTAAAATTGGGTGAAGGAGGCTATGGAGATGTGTATAGGGGTAAGCTAAGAAGTGGACCATTTGTAGCTATAAAGATGTTGAAGATAAAATCAAAAACTAATGGACAAGAATTCATAAGTGAAGTTGCAACAATAGGAAGAATATACCATTCAAATGTGGTAAGACTCATTGGATTTTGTGTTGAAGGATTAAAACGTGCTCTTGTCTATGAGTACATGCCCAATGGCTCTCTTGATAAATATATTTTCAACAAAGAGGATGTTATATCTTTAACTTACAATCAAATACATGAGATATCTCTTGGAATAGCTCGTGGAATTTCATATTTACATCAAGGTTGTGATATGCAAATTTTGCATTTTGATATTAAGCCTCATAACATTCTTCTCGATGAAAATTTTATCCCTAAAGTTTCAGACTTTGGTCTTGCAAAGCTTTACCCTATTGACAATAGTATTGTCACTTTGACGGCTGCAAGAGGAACAATTGGATACATGGCCCCTGAATTATTCTACCAAAATATTGGAAGAATATCTTATAAAGCTGGTGTGTATAGCTTTGGAATGCTTTTGATTGAAATGTCTAGTAGGAGAAGAAATTTGAATTCACATGCAGAGCATTCAAGTCAACTCTACTTCCCCTTTTGGATTTATGAACAATTGGTTAAAAATAGAGAGAAAGAAATAGAAGATTCTATCATGGAAGAATTGAATGATGTTTTGAAGAAAATGTTCATGGTTGCTCTTTGGTGTATACAATTAAAACCTATTGATCGTCCTTCAATGAACAAAGTAGTGGAGATGCTTGAAGGAGATATTTCAAATATTGAAATGCCTCCTGTACTATATCCGCATGAAACAATTCAAGAGAATCTTGATACGGGGTCAAATGACACTGATACAGATATTGGTTCTACCAGTTATGTGGAGGAAATTGAAAGCAATTCTTTATTAAAGTATTCTGCTTGA 1275 0.3341 MRDYFYGIYKGLRELTGFENIGLYDSSIHSYQTGIFTGKYVVPGIVARFMFGLICFLVLLIYTYRRRHSSLYENIEDFLQGNTLMPIRYSYKEIKQMTKGFKVKLGEGGYGDVYRGKLRSGPFVAIKMLKIKSKTNGQEFISEVATIGRIYHSNVVRLIGFCVEGLKRALVYEYMPNGSLDKYIFNKEDVISLTYNQIHEISLGIARGISYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNSIVTLTAARGTIGYMAPELFYQNIGRISYKAGVYSFGMLLIEMSSRRRNLNSHAEHSSQLYFPFWIYEQLVKNREKEIEDSIMEELNDVLKKMFMVALWCIQLKPIDRPSMNKVVEMLEGDISNIEMPPVLYPHETIQENLDTGSNDTDTDIGSTSYVEEIESNSLLKYSA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04725 424 SMART serkin_6 99 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04725 424 Gene3D Phosphorylase Kinase; domain 1 76 174 - -
Vivi4g04725 424 PANTHER RUST RESISTANCE KINASE LR10-RELATED 72 384 IPR045874 GO:0004672
Vivi4g04725 424 Gene3D Transferase(Phosphotransferase) domain 1 175 380 - -
Vivi4g04725 424 ProSitePatterns Protein kinases ATP-binding region signature. 105 127 IPR017441 GO:0005524
Vivi4g04725 424 FunFam serine/threonine-protein kinase PBS1-like 68 174 - -
Vivi4g04725 424 Pfam Protein kinase domain 103 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04725 424 SUPERFAMILY Protein kinase-like (PK-like) 84 372 IPR011009 -
Vivi4g04725 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Vivi4g04725 424 ProSiteProfiles Protein kinase domain profile. 99 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04725 424 FunFam PR5-like receptor kinase 175 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04725 Vivi-Chr4 176170260 176189533 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04725 32 393 Receptor kinase-like Gene Family AT1G66910 45.213 1.58e-103 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04725 Pkinase 5.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04725 - - vvo:131596073 686.797