Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04723 ATGCTATTGATATATATGTATGGGAGAAGACATATATCAATTTATGCAAATATTGAAGGTTTTCTTCAAAGAAGTACCTTAATGCCAATTAGGTATTCACACAAAGAAATAAAGAATATGACAAGATGTTTCAAAAACAAGCTGGGTGAAGGAGGATTTGGAGCTGTTTATAAAGGAAAGCTTCGTAGTGGATCATTTGTAGCCATAAAGATGTTGGGAAAATCAAAGGGTAATGGAGAAGATTTTATCAATGAAGTCGCAACTATAGGAAGAATACATCACGCCAACGTGGTTCGACTTATTGGATTTTGTGTGGAAAGATCAAACCGAGCTCTTGTTTATGAATTCATGCCCAATGGTTCTCTTGATAAATACATTTCTTCTAGAGAGAATGTTATTACTCTAACTTATAAACAAATGTTTGACATATCTCTTGGAGTGGCTCGTGGGATTGCTTATTTGCATCAAGGATGTGACATGCAAATTTTGCATTTTGACATTAAGCCACATAACATACTTCTTGATGAGAGCTTTATCCCCAAAGTTTCAGACTTTGACTTTGGTCTTGCAAAGCTTTATCCTAATGACATTAGCATTGTCACTTTGACTGCAGCAAGAGGTACAATTGGTTATATGGCTCCTGAATTATTCTATCAAAATATTGGAGGAGTTTCTTATAAGGCTGATGTATATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGTAAGAGAAGAAATTTAAATCCACATGCAGATCGTTCAAGCCAACTTTTCTTTCCTTTTTGGATCTACAATCAATTGGTTGAAGAAAAGGACATAGAAATGGATGAAATTACCAATGAAGAAATGATTAATGTGAAAAAGATGTTCATAACTTCATTATGGTGTATACAATTAAAACCAAGTGATCGGCCTCCAATGGACAAAGTAATAGAGATGCTAGAAGGGAGTATTGACAACATCGAAATTCCTCCAAAACCTTCTCTATATCCGAATGAAATTATTCAGGAAGATCTCGAAGTAACCTCTGAGGAATTTGACTCAGATGCTGCTACTGATTGA 1062 0.3493 MLLIYMYGRRHISIYANIEGFLQRSTLMPIRYSHKEIKNMTRCFKNKLGEGGFGAVYKGKLRSGSFVAIKMLGKSKGNGEDFINEVATIGRIHHANVVRLIGFCVERSNRALVYEFMPNGSLDKYISSRENVITLTYKQMFDISLGVARGIAYLHQGCDMQILHFDIKPHNILLDESFIPKVSDFDFGLAKLYPNDISIVTLTAARGTIGYMAPELFYQNIGGVSYKADVYSFGMLLMEMASKRRNLNPHADRSSQLFFPFWIYNQLVEEKDIEMDEITNEEMINVKKMFITSLWCIQLKPSDRPPMDKVIEMLEGSIDNIEIPPKPSLYPNEIIQEDLEVTSEEFDSDAATD 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04723 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Vivi4g04723 353 FunFam serine/threonine-protein kinase PBS1-like 15 116 - -
Vivi4g04723 353 Gene3D Transferase(Phosphotransferase) domain 1 117 323 - -
Vivi4g04723 353 Gene3D Phosphorylase Kinase; domain 1 21 116 - -
Vivi4g04723 353 SUPERFAMILY Protein kinase-like (PK-like) 28 315 IPR011009 -
Vivi4g04723 353 PANTHER RUST RESISTANCE KINASE LR10-RELATED 16 334 IPR045874 GO:0004672
Vivi4g04723 353 SMART serkin_6 42 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04723 353 FunFam PR5-like receptor kinase 117 326 - -
Vivi4g04723 353 Pfam Protein kinase domain 45 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04723 353 ProSiteProfiles Protein kinase domain profile. 42 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04723 353 ProSitePatterns Protein kinases ATP-binding region signature. 48 70 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04723 Vivi-Chr4 176130720 176132001 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04723 31 340 Receptor kinase-like Gene Family AT5G38280 49.842 1.95e-106 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04723 Pkinase 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04723 - - vvo:131600386 712.22