Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g04717 ATGAGAAAAGGAAAATCCTGCTCCCCTTCTGCGGAACCAAAATCCCTTATAAGCATCCTCCAAATTGTTATGGTAGTTGTGCTGCTATTGCATCATCAAACATGCGATGCAACAAGTAGCAATAAGCAAACATATTGTCCACCTTCTTCATGCGGCAAAATCACAATCATAAAACATCCTTTCCGACTTATGGATGACCCAACAACCTGCGGTGATCCGAGGTACGAGTTATCCTGCGAAAACAACATCACAATGTTAACTCTGTTTTCTGGTAAATACTATGTGAAATCAATCGACTACAAAAACTACACAATTCGGTTAGTTGATCCCGGAATTGAAGAGGGTGATTGCTCCTCTATTCCTCGCTATTACTTAAATGGAAACAATTTCACTTACAGTTATTCTATTTCCACCGATAGATACAACGAGGATCCATATCAAATCGATGGCCGGTTTGGGTTCCAGGACATAATTTACTTGAATTGTAGCAAACCAGTGAAGGACGATCCTGAATATCTGGATACAGCTCTGTGTAGAGTCAACTTGGACTCCAAAAGCCATGTTTACGCTTTTGTGGGGGGTTACTTTTACGTTGGGAAATTAAAAGATTATTGCCGAGTGAAGCTTGTTGCTATGTCATCGATGTTAGCTTTTCCTAATATCAGTGTCAGTGTCAGTGTCAGAGATGGTGTACCGGATCGACAACTTTCATACCAGAAAATCCATGAAATGCTACTCTATGGATTTGAGATATCATGGATAAGTGCTGCTTGTAGAGATTCTTGCGGCGATAACGAATACTGCATCTTATCAGAGATAACCAGAGGAGATTTTGAATGTCATCAATCCAAATATATTGATAAATGCAGTTATCCATTCGACCCATTCGGACCTGAACGGAATTGCAACCACATATTGACAAAGCTGCTCATATTCGTGGAAGAAATTTTGCTCGGTATTATTAAAGGAGCATTAAAAATAGTTGGTACGACGAAAACTTATAAAGTATCAAAGCAAGAACTTTCTATTTCTAAAACTGGATTGGAGATAGGAAAAATCATAGGCAGGTATCTCTTGCCGCCGTGTATAGTAAGATATGTAACGGGCCTCTTGGTTTTCTGTGTGTTAATGATATATATATGTCAAAGAAGGCATTTATCAATATATGAAAATATTGAAGTATTTCTTCAGACAAATACTTTGATTCCAATAAGGTATTCATACAAAGAAATAAAGAATATGACTAGAAGTTTCAGAGACAAGCTGGGTGAAGGTGGTTTTGGAGCTGTTTATAAAGGAAAGCTACGCAGCGGACAACTTGTGGCCATAAAGATGTTAGGTAAATCAAAGGGCAATGGACAAGATTTTATTAATGAAGTAGGAACCATAGGAAGAATACATCACACCAATGTGGTTCGACTTATTGGATTTTGTTTTGAAAGATCAAAACGAGCTCTTGTTTATGAATTCATGCCCAATGGTTCTCTTGATAAATATATTTCTTCTAAAGAGAATGCCATCTCTCTAACTTATAACCAAATGTATGAGATATCTCTTGGAGTGGCTCGTGGTATTTCTTATTTGCATCAAGGATGTGACATGCAAATTTTGCATTTCGATATCAAGCCACATAACATCCTTCTCGATGAAAACTTCATCTCAAAAGTGTCAGACTTTGGTCTTGCCAGGCTTTATCCTAATGACATTAGCATTGTCACTTTGACTGCAGCAAGAGGTACAATTGGTTACATGGCTCCTGAATTATTTTATCAAAATATTGGAGGAGTTTCCTATAAGGCTGATGTATATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGTAAGAGAAGAAATTTAAATCCACATGCAGATCGTTCAAGCCAGCTTTTCTTTCCTTTTTGGATCTACAATCAATTGGTTGAAGAAAAGGACATAGAAATGGATGAAATTTCAAATGAAGAAATGATTAATGTGAAAAAGATGTTCAAAACTGCATTATGGTGTATACAATTAAAACCAAATGATCGTCCTCCAATGGACAGAGTAATAGAGATGCTTGAAGGAAACATTGAAAATATTGAGATGCCTCCAAAACCTTCTCTATATCCAAATGAAGTTATTCAGAAAGATCTTGAAGTAACCTCTAATGAAATTGAGTCAGATGTTGCTATTGACTCTGTTAGTTTTTTGGAGGAAACTAGCGCATAG 2208 0.3691 MRKGKSCSPSAEPKSLISILQIVMVVVLLLHHQTCDATSSNKQTYCPPSSCGKITIIKHPFRLMDDPTTCGDPRYELSCENNITMLTLFSGKYYVKSIDYKNYTIRLVDPGIEEGDCSSIPRYYLNGNNFTYSYSISTDRYNEDPYQIDGRFGFQDIIYLNCSKPVKDDPEYLDTALCRVNLDSKSHVYAFVGGYFYVGKLKDYCRVKLVAMSSMLAFPNISVSVSVRDGVPDRQLSYQKIHEMLLYGFEISWISAACRDSCGDNEYCILSEITRGDFECHQSKYIDKCSYPFDPFGPERNCNHILTKLLIFVEEILLGIIKGALKIVGTTKTYKVSKQELSISKTGLEIGKIIGRYLLPPCIVRYVTGLLVFCVLMIYICQRRHLSIYENIEVFLQTNTLIPIRYSYKEIKNMTRSFRDKLGEGGFGAVYKGKLRSGQLVAIKMLGKSKGNGQDFINEVGTIGRIHHTNVVRLIGFCFERSKRALVYEFMPNGSLDKYISSKENAISLTYNQMYEISLGVARGISYLHQGCDMQILHFDIKPHNILLDENFISKVSDFGLARLYPNDISIVTLTAARGTIGYMAPELFYQNIGGVSYKADVYSFGMLLMEMASKRRNLNPHADRSSQLFFPFWIYNQLVEEKDIEMDEISNEEMINVKKMFKTALWCIQLKPNDRPPMDRVIEMLEGNIENIEMPPKPSLYPNEVIQKDLEVTSNEIESDVAIDSVSFLEETSA 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g04717 735 Pfam Protein tyrosine and serine/threonine kinase 418 686 IPR001245 GO:0004672|GO:0006468
Vivi4g04717 735 Pfam Wall-associated receptor kinase galacturonan-binding 46 109 IPR025287 GO:0030247
Vivi4g04717 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Vivi4g04717 735 Gene3D Phosphorylase Kinase; domain 1 393 490 - -
Vivi4g04717 735 FunFam serine/threonine-protein kinase PBS1-like 389 490 - -
Vivi4g04717 735 Gene3D Transferase(Phosphotransferase) domain 1 491 696 - -
Vivi4g04717 735 ProSiteProfiles Protein kinase domain profile. 416 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04717 735 ProSitePatterns Protein kinases ATP-binding region signature. 422 444 IPR017441 GO:0005524
Vivi4g04717 735 FunFam PR5-like receptor kinase 491 698 - -
Vivi4g04717 735 PANTHER RUST RESISTANCE KINASE LR10-RELATED 389 707 IPR045874 GO:0004672
Vivi4g04717 735 SMART serkin_6 416 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g04717 735 SUPERFAMILY Protein kinase-like (PK-like) 400 687 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g04717 Vivi-Chr4 175965121 175976740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g04717 25 728 Receptor kinase-like Gene Family AT5G38260 33.936 1.25e-109 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vivi4g04717 PK_Tyr_Ser-Thr 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g04717 - - tpra:123893228 910.598